CN182094

Overview
NameCN182094
Unique NameCN182094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.275e-50
Identity = 125/255 (49.02%), Postives = 162/255 (63.53%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQ---LNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLN--------NYMQGWL 733
            GRGRVE+KRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S  +  T+ERY +C Y     N    E  + S  QE  KLK++YE+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +   EG+   T Q    N +A   G       P   +  + L+C  EP LQIG+Q      V   G S++        N++QGW+
Sbjct:    2 GRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSVGIESTIERYNRC-YNCSLSNNKPEETTQ-SWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQ--QHYYVQGEGSSVSKSNVAGETNFVQGWV 251          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 8.644e-50
Identity = 115/233 (49.36%), Postives = 154/233 (66.09%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 700
            GRG+V+LKRIENKINRQVTF+KRR+GLLKKA E+SVLCDAEVALIIFS +GKLYE+ + S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:    2 GRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.248e-48
Identity = 113/233 (48.50%), Postives = 153/233 (65.67%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 700
            GRG+V+LKRIEN INRQVTF+KRR+GLLKKA E+SVLCDAEVALIIFS +GKLY++ + S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:    2 GRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.195e-48
Identity = 108/237 (45.57%), Postives = 158/237 (66.67%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD---TFFHALECEPTLQIG--YQPADPISV 688
            GRGRV+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEVAL++FS++GKL+E+ + S M K LERY++ +Y      APE +V+   ++      EY +LKA+ E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P       +  + +  P L +G  YQ  DP+ +
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM------EYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEEDPMEM 232          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.015e-47
Identity = 113/241 (46.89%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL------KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH------ALECEPTLQIG--YQPAD 676
            GRGRVELKRIENKINRQVTF+KRR GLLKKA E+SVLCDAEV+LI+FS++GKL+E+ S S M K LERY++ +Y      AP+ +V+A    + +   EY +LKA+ E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L      ++ ++   Q    QLN S +D         PQ   F H      A +  P L +G  YQ  D
Sbjct:    2 GRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNA----QTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDV--------PQPQPFQHPHLYMIAHQTSPFLNMGGLYQEED 230          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.849e-47
Identity = 98/174 (56.32%), Postives = 133/174 (76.44%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 532
            GRG+V+LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA I+FS +GKLYE+ + S M K LERY++ +Y A +  +SA    E +   EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:    2 GRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSY-AEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 105/239 (43.93%), Postives = 158/239 (66.11%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD-----TFFHALECEPTLQIG--YQPADPISV 688
            GRGRV+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEVAL++FS++GKL+E+ + S M K LERY++ +Y      APE +V+   ++      EY +LKA+ E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P         +  + +  P L +G  YQ  DP+++
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM------EYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMGGLYQEDDPMAM 234          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.758e-45
Identity = 100/192 (52.08%), Postives = 134/192 (69.79%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 577
            GRG V+L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:    2 GRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.758e-45
Identity = 100/192 (52.08%), Postives = 134/192 (69.79%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 577
            GRG V+L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:    2 GRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.209e-43
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQ 610
            GRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVAL+IFS++GKL+E+ + S M K LERY +  Y   +    ++S  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L +++ E  + NT+        C       QPQ
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKE-REKNTVHQEVQLIQCSNNSSILQPQ 199          
The following BLAST results are available for this feature:
BLAST of CN182094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL6_ARATH2.275e-5049.02Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD14_ORYSJ8.644e-5049.36MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI1.248e-4848.50MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AP1_SINAL6.195e-4845.57Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH4.015e-4746.89Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD15_ORYSJ6.849e-4756.32MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AP1_ARATH2.603e-4643.93Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD18_ORYSJ3.758e-4552.08MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.758e-4552.08MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL8_SINAL1.209e-4348.28Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182094 ID=CN182094; Name=CN182094; organism=Citrus sinensis; type=EST; length=791bp
GGCCCCCAATGGGAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACA
CTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGC
TCAACCTCAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACAT
TGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGC
CCGAGTCTGAATAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGG
CGGGCATTACCAGTCAATGTATTGCAGTTGATCCATAAGAA
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