CN182094

Overview
NameCN182094
Unique NameCN182094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:82..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 2
Query:   14 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 532
            RG+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   +++Y KC     G+     +A+E L+   L  + E   LK   E LQ+    + G   G +N +EL  LE+ L+  + QIRS +   ML  +  L++KE +L   NK L +++ E
Sbjct:    3 RGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEE 181          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 73/181 (40.33%), Postives = 115/181 (63.54%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 547
            GRG++ +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SSSSM   +ERYQ+    A E +      +  +   Q+E   L+ + + L  + R LLGEE+     ++L+ L+ Q++MSL  IR+ + Q + + + +L  K  L+ + N  L+++    +Q N
Sbjct:    2 GRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQE----AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRN 177          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.533e-30
Identity = 73/157 (46.50%), Postives = 106/157 (67.52%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 481
            GRG++E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F +SSSM   +ERY +     P   ++A    +L  QQE   L+ +   LQ   R LLG++L  L+ ++L++LE +L+MSLK IR  +   M+D + EL  K
Sbjct:    2 GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.460e-30
Identity = 77/180 (42.78%), Postives = 113/180 (62.78%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 547
            GRG++ +++I++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFSN  KLY+F +SSS+  T+ER+   N    E       A E+   Q+E   L+    +LQ + R L G EL  L+ KEL+++E QL+MSL+ IR  R Q + + + EL  K  L+   N  L +++   +Q N
Sbjct:    2 GRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDF-ASSSVKSTIERF---NTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQEN 177          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKC-NYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ 541
            GRG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS +  L+ L E+YQ   N    E N   +  LE++      ++K   E L+   R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KEQ+L + N  L + + E  Q
Sbjct:    2 GRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEINHDQQILLEMT------RMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQ 174          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.825e-30
Identity = 78/174 (44.83%), Postives = 112/174 (64.37%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 532
            GRG++E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  GKL+E+ SS+ M +TL RY   N+ +   + +  +  E+        LK +   LQ     L G+ L PL  KEL+SLE+QL  +L  +R  + + + + L E + KEQ     N+TL++++ E
Sbjct:    2 GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRYG--NHQSSSASKAEEDCAEVDI------LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQE 166          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 526
            GRG++ ++RI+N  +RQVTF+KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEF SS++M   ++RY      A E  +      E+   Q+E   L+ +   LQ S + L+GEEL  L  ++L+ LE +L++SL+ IR  +   +   + EL  K  L+ + N  L + L
Sbjct:    2 GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF-SSTNMKTVIDRYT----NAKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSL 169          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.411e-29
Identity = 75/174 (43.10%), Postives = 109/174 (62.64%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLM 529
            GRG++E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS++GKL+E+CS   SM + + RY +   GA  P    R  L      E  K++     LQ S +   G++L     +EL  LE+QL+ +L +IR+ + + M   +  L+  E++L + N  + Q LM
Sbjct:    5 GRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTT-GASLPVEDNRVQL----YDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM 173          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNT---LQLNPSAE 574
            GR ++E+KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GKLY F S  +++K L+RY K +         A +   L  Q + L   + YE L+     L+G  +  ++   L  LE  L+ +L   R+ +T+ ML  +  L+ KE++L E N+ L  ++   + V     ++++P+ +
Sbjct:    2 GRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQH---------ADDLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEMSPAGQ 183          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 69/174 (39.66%), Postives = 109/174 (62.64%), Query Frame = 2
Query:   14 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 532
            RG+V+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L  AN+ L+++++E
Sbjct:    3 RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
The following BLAST results are available for this feature:
BLAST of CN182094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL12_ARATH5.269e-3141.90Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD25_ORYSJ1.533e-3040.33MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD23_ORYSJ1.533e-3046.50MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL17_ARATH4.460e-3042.78Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
M17_MAIZE5.825e-3041.34MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL15_ARATH5.825e-3044.83Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD57_ORYSJ7.608e-3042.20MADS-box transcription factor 57 OS=Oryza sativa s... [more]
FBP24_PETHY8.411e-2943.10MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
FLC_ARATH1.099e-2837.17MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD26_ORYSJ1.435e-2839.66MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182094 ID=CN182094; Name=CN182094; organism=Citrus sinensis; type=EST; length=791bp
GGCCCCCAATGGGAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACA
CTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGC
TCAACCTCAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACAT
TGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGC
CCGAGTCTGAATAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGG
CGGGCATTACCAGTCAATGTATTGCAGTTGATCCATAAGAA
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