CN188879

Overview
NameCN188879
Unique NameCN188879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNPX (Acetylglutamate kinase OS=Synechococcus sp. (strain WH8102) GN=argB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.934e-32
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            RV +LSE+LP+IQ+F G+ IV+KYGGAAM   +                    +PV+VHGGGPEIN WLKR  I   FRDGLRVTDA+TM++V MVLVGRVNK +V+ +N+ G  AVGLSG DG L  ARP
Sbjct:   13 RVSVLSEALPYIQRFSGRRIVIKYGGAAMAHAE---LREAVFRDLALLACVGVQPVVVHGGGPEINQWLKRLEIPAEFRDGLRVTDADTMDVVEMVLVGRVNKQIVNGLNQLGTRAVGLSGSDGSLVEARP 140          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNJB (Acetylglutamate kinase OS=Synechococcus sp. GN=argB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 79/162 (48.77%), Postives = 102/162 (62.96%), Query Frame = 2
Query:  209 KSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            +++ SL+ A  +  D  T    R  IL E+LP+IQ+++G+ IV+KYGGAAM   ++                   RPVLVHGGGPEIN WL++  I   F DGLRVTDA TME+V MVLVG+VNK +V LI+ AG +AVGL G DG L  AR S   A++GF
Sbjct:    2 QTNSSLSEATGSACDPLT----RAQILIEALPYIQQYQGRVIVIKYGGAAMVHQER---RAEVLRDIVFLACVGIRPVLVHGGGPEINSWLQKLDIPFKFVDGLRVTDAATMEVVEMVLVGKVNKQIVQLISLAGGSAVGLCGRDGNLIKAR-SQGRAEIGF 155          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROM2 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=argB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKNAFFRDIALLSTVGVCPIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKQIVKGINKTGSLAVGISGLDGNLIQSR 132          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROMS (Acetylglutamate kinase OS=Prochlorococcus marinus (strain AS9601) GN=argB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WL++  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKNAFFRDIALLSTVGVCPIVIHGGGPEINNWLRKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKEIVKGINKTGSLAVGISGLDGNLIQSR 132          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNJA (Acetylglutamate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=argB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            R  IL E+LP+IQ+++G+ IV+KYGGAAM   ++                   RPVLVHGGGPEIN WL++  I   F DGLRVTDA TME+V MVLVG+VNK +V LI+ AG +AVGL G DG L  AR S   A++GF
Sbjct:    8 RAQILIEALPYIQQYQGRVIVIKYGGAAMVHQER---RAEVLRDIVFLACVGIRPVLVHGGGPEINSWLQKLDIPFKFVDGLRVTDAATMEVVEMVLVGKVNKQIVQLISLAGGSAVGLCGRDGNLIRAR-SQGRAEIGF 143          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROM9 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=argB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TM+IV MVL+GRVNK +V  +NK G+ AVG+SG+DG L  +R
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKKAFFRDIALLSSVGVCPIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMDIVEMVLMGRVNKQIVKGVNKTGSLAVGISGLDGNLIQSR 132          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROM0 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=argB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            RV ILSE+LP+IQ F G+ IV+KYGG+ M+ +   N                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVMEDDDLKNAFFRDIALLSTVGVC---PIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKQIVKGINKTGSLAVGISGLDGNLIQSR 132          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PORUM (Acetylglutamate kinase OS=Porphyra umbilicalis GN=argB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 77/140 (55.00%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            RV +LS+ +  +QKF  + IV+KYGGAAMK NQK                   RP+LVHGGGPEINFWL +  I P F +G+RVTD  TM+IV MVLVGRVNK LV+ INK G  +VGLSG DG L T+RPS +   LGF
Sbjct:    7 RVKVLSD-VTILQKFSSRIIVIKYGGAAMK-NQK--LKDHVISDLVFLSFIGLRPILVHGGGPEINFWLDQLKILPKFENGVRVTDQPTMDIVEMVLVGRVNKDLVASINKQGGKSVGLSGKDGLLITSRPS-DKPNLGF 141          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PORPU (Acetylglutamate kinase OS=Porphyra purpurea GN=argB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 77/140 (55.00%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            RV +LS+ +  +QKF  + IV+KYGGAAMK NQK                   RP+LVHGGGPEINFWL +  I P F +G+RVTD  TM+IV MVLVGRVNK LV+ INK G  +VGLSG DG L T+RPS +   LGF
Sbjct:    7 RVKVLSD-VTILQKFSSRIIVIKYGGAAMK-NQK--LKDHVISDLVFLSFIGLRPILVHGGGPEINFWLDQLKILPKFENGVRVTDQPTMDIVEMVLVGRVNKDLVASINKQGGKSVGLSGKDGLLITSRPS-DKPNLGF 141          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PROMT (Acetylglutamate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=argB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            RV +LSE+LP+IQ+F  K IV+KYGG+AM      N                   V+VHGGGPEIN WL++ GI+PVF DGLR+TD  TM++V MVL GRVNK +VS IN  G  AVGL G+DG L  AR
Sbjct:   25 RVSVLSEALPYIQRFANKRIVIKYGGSAMADKTLQNAVFRDLALLSSVGVQI---VVVHGGGPEINQWLEKLGIKPVFLDGLRITDTETMDVVEMVLTGRVNKQIVSGINNHGRLAVGLCGIDGGLIEAR 151          
The following BLAST results are available for this feature:
BLAST of CN188879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARGB_SYNPX2.934e-3255.73Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_SYNJB1.115e-3148.77Acetylglutamate kinase OS=Synechococcus sp. GN=arg... [more]
ARGB_PROM21.901e-3152.31Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROMS4.236e-3151.54Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_SYNJA5.532e-3152.86Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_PROM95.532e-3150.77Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROM07.226e-3151.54Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PORUM1.233e-3055.00Acetylglutamate kinase OS=Porphyra umbilicalis GN=... [more]
ARGB_PORPU1.233e-3055.00Acetylglutamate kinase OS=Porphyra purpurea GN=arg... [more]
ARGB_PROMT2.746e-3053.08Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188879 ID=CN188879; Name=CN188879; organism=Citrus sinensis; type=EST; length=696bp
CATTAATCTCTCTGATCTCTGAACCCAAGCAATATCTGCGGAGAATATGG
CCGCCGCCGCCGCTGCCTCCCTAGAAATTGCTCCTTTTTTACAGTCACAG
CTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCAGTCTCCCTCCGTCTT
CAAAATCAAAACCCCACATGTCGAGAATTTCGCTTCGAACCACCGCACCG
AAATAACAAAATCATCCCGCTCTCTCACATCAGCAGCAACAGCCGTAACT
GACACACAGACCCCAGCCGAGTTCCGTGTCGACATTCTTTCCGAATCTCT
TCCCTTCATTCAGAAATTCCGCGGAAAGACCATCGTCGTCAAATACGGCG
GCGCCGCCATGAAACCCAACCAAAAGGACAACCTCCTCGCCTCCGTCGTA
AAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCGTCCTGTCTTGGTCCA
CGGCGGCGGTCCTGAGATCAATTTCTGGCTCAAACGTTTCGGAATCGAGC
CCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCCAACACTATGGAGATC
GTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAGCTTGGTTTCTCTCAT
CAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGGGCATGGACGGGCGCC
TCTTCACGGCCCGGCCCAGCCCAAACTCCGCTAAACTGGGTTTCGT
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