CN188879

Overview
NameCN188879
Unique NameCN188879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_HYDS0 (Acetylglutamate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=argB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  284 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGAT---AVGLSGMDGRL 652
            IL E+LPFI+ F GK  VVKYGGAAM   +++                  + VLVHGGG +I   L +  I+  F +G+R TD  ++++  MVL+G++NK +VS++NK  +    A+GLSG+D  L
Sbjct:   10 ILQEALPFIRDFYGKVFVVKYGGAAM---EEEELKHSFAKDIALLRYVGIKVVLVHGGGKDITNMLNKLNIQTEFINGIRKTDKESLDVARMVLIGKLNKDIVSMLNKEMSNMHGAIGLSGIDANL 132
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CAMJR (Acetylglutamate kinase OS=Campylobacter jejuni (strain RM1221) GN=argB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 652
            + ++L E+LP+I+KF  K I++KYGG+AM   + +                  +P++VHGGG +I+   ++ G++  F++GLRV+D  T E+ SMVL   +NK+LV  +   G  A+GL G DG L
Sbjct:    7 KANVLIEALPYIRKFNSKIILIKYGGSAM---ENEELKHCVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL-NHINKNLVHSLQNLGVKAIGLCGKDGAL 128
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CAMJJ (Acetylglutamate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=argB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 652
            + ++L E+LP+I+KF  K I++KYGG+AM   + +                  +P++VHGGG +I+   ++ G++  F++GLRV+D  T E+ SMVL   +NK+LV  +   G  A+GL G DG L
Sbjct:    7 KANVLIEALPYIRKFNSKIILIKYGGSAM---ENEELKHCVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL-NHINKNLVHSLQNLGVKAIGLCGKDGAL 128
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CAMJD (Acetylglutamate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=argB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 652
            + ++L E+LP+I+KF  K I++KYGG+AM   + +                  +P++VHGGG +I+   ++ G++  F++GLRV+D  T E+ SMVL   +NK+LV  +   G  A+GL G DG L
Sbjct:    7 KANVLIEALPYIRKFNSKIILIKYGGSAM---ENEELKHCVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL-NHINKNLVHSLQNLGVKAIGLCGKDGAL 128
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CAMJ8 (Acetylglutamate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=argB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 652
            + ++L E+LP+I+KF  K I++KYGG+AM   + +                  +P++VHGGG +I+   ++ G++  F++GLRV+D  T E+ SMVL   +NK+LV  +   G  A+GL G DG L
Sbjct:    7 KANVLIEALPYIRKFNSKIILIKYGGSAM---ENEELKHCVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL-NHINKNLVHSLQNLGVKAIGLCGKDGAL 128
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SILPO (Acetylglutamate kinase OS=Silicibacter pomeroyi GN=argB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 2 
Query:  287 LSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 652
            L+ +LP++Q++    +V+K GG AM     D                   PV+VHGGGP IN  LK+  I+  F +G RVTD  T+E+V MVL G VNK +V  IN+ G  AVGLSG D  L
Sbjct:   17 LNAALPYLQRYDDAIVVIKLGGHAMG---SDEAMESFARDVVLLRQVGVNPVVVHGGGPMINAMLKKLDIQSEFVNGKRVTDVATVEVVEMVLSGVVNKRIVQEINRQGGKAVGLSGKDANL 135
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_LACLS (Acetylglutamate kinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=argB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 2 
Query:  245 VTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            +TD+Q  A+    IL+ESL +  K+R +T+V+KYGG  M     +                  + VLVHGGGP I   L+++  +  F  GLRVT+  T ++    L G+VNKSLV  I + G  A+G+SG+DG+L  A+P
Sbjct:    1 MTDSQITAQ----ILTESLKYFLKYRDQTVVIKYGGNVMID---EKVKESILKDILLLKTVGIKVVLVHGGGPAIGELLEKYEQKSQFVKGLRVTNKKTAQLALTALAGKVNKSLVQDIIRLGGNAIGVSGIDGKLIEAKP 134
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_LACLM (Acetylglutamate kinase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=argB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 54/139 (38.85%), Postives = 77/139 (55.40%), Query Frame = 2 
Query:  251 DTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            D+Q  A+     L+ESL +  K+R +T+V+KYGG AM     +                  + VLVHGGGP I   L+++  +  F  GLRVTD  T ++    L G+VNKSLV  I + G  A+G+SG+DG+L  A+P
Sbjct:    3 DSQNTAQ----TLTESLKYFLKYRDQTVVIKYGGNAMID---EKVKESILKDILLLKTVGIKVVLVHGGGPAIGELLEKYEQKSQFVQGLRVTDKKTAQLALTALAGKVNKSLVQDIIRLGGNAIGVSGIDGKLIEAKP 134
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_LACLA (Acetylglutamate kinase OS=Lactococcus lactis subsp. lactis GN=argB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 54/139 (38.85%), Postives = 77/139 (55.40%), Query Frame = 2 
Query:  251 DTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP 667
            D+Q  A+     L+ESL +  K+R +T+V+KYGG AM     +                  + VLVHGGGP I   L+++  +  F  GLRVTD  T ++    L G+VNKSLV  I + G  A+G+SG+DG+L  A+P
Sbjct:    3 DSQNTAQ----TLTESLKYFLKYRDQTVVIKYGGNAMID---EKVKESILKDILLLKTVGIKVVLVHGGGPAIGELLEKYEQKSQFVQGLRVTDKKTAQLALTALAGKVNKSLVQDIIRLGGNAIGVSGIDGKLIEAKP 134
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_THELT (Acetylglutamate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=argB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 2 
Query:  284 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            IL E L ++++FR KT VVK GGAA+   +K+                   P++VHGGG EI   + + GI+P+F++G RVTD  T++I  MVL  ++NK +V  IN  G  A+G+SG D  L        +  +G+
Sbjct:    8 ILFEVLQYMKEFREKTFVVKVGGAAL---EKEEAKTSFAKSIVFLRHVQVNPIIVHGGGVEITRLMNQLGIKPLFKNGYRVTDEKTLQIAEMVL-EKINKDIVLKINLHGGRAIGVSGKDDNLLLCEKDIANGDIGY 140
The following BLAST results are available for this feature:
BLAST of CN188879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARGB_HYDS01.082e-1840.48Acetylglutamate kinase OS=Hydrogenobaculum sp. (st... [more]
ARGB_CAMJR1.413e-1837.30Acetylglutamate kinase OS=Campylobacter jejuni (st... [more]
ARGB_CAMJJ1.413e-1837.30Acetylglutamate kinase OS=Campylobacter jejuni sub... [more]
ARGB_CAMJD1.413e-1837.30Acetylglutamate kinase OS=Campylobacter jejuni sub... [more]
ARGB_CAMJ81.413e-1837.30Acetylglutamate kinase OS=Campylobacter jejuni sub... [more]
ARGB_SILPO3.149e-1842.62Acetylglutamate kinase OS=Silicibacter pomeroyi GN... [more]
ARGB_LACLS4.112e-1838.30Acetylglutamate kinase OS=Lactococcus lactis subsp... [more]
ARGB_LACLM4.112e-1838.85Acetylglutamate kinase OS=Lactococcus lactis subsp... [more]
ARGB_LACLA4.112e-1838.85Acetylglutamate kinase OS=Lactococcus lactis subsp... [more]
ARGB_THELT5.371e-1837.23Acetylglutamate kinase OS=Thermotoga lettingae (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188879 ID=CN188879; Name=CN188879; organism=Citrus sinensis; type=EST; length=696bp
CATTAATCTCTCTGATCTCTGAACCCAAGCAATATCTGCGGAGAATATGG
CCGCCGCCGCCGCTGCCTCCCTAGAAATTGCTCCTTTTTTACAGTCACAG
CTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCAGTCTCCCTCCGTCTT
CAAAATCAAAACCCCACATGTCGAGAATTTCGCTTCGAACCACCGCACCG
AAATAACAAAATCATCCCGCTCTCTCACATCAGCAGCAACAGCCGTAACT
GACACACAGACCCCAGCCGAGTTCCGTGTCGACATTCTTTCCGAATCTCT
TCCCTTCATTCAGAAATTCCGCGGAAAGACCATCGTCGTCAAATACGGCG
GCGCCGCCATGAAACCCAACCAAAAGGACAACCTCCTCGCCTCCGTCGTA
AAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCGTCCTGTCTTGGTCCA
CGGCGGCGGTCCTGAGATCAATTTCTGGCTCAAACGTTTCGGAATCGAGC
CCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCCAACACTATGGAGATC
GTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAGCTTGGTTTCTCTCAT
CAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGGGCATGGACGGGCGCC
TCTTCACGGCCCGGCCCAGCCCAAACTCCGCTAAACTGGGTTTCGT
back to top