CN188879

Overview
NameCN188879
Unique NameCN188879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAR (Acetylglutamate kinase OS=Staphylococcus aureus (strain MRSA252) GN=argB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQQQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAW (Acetylglutamate kinase OS=Staphylococcus aureus (strain MW2) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAT (Acetylglutamate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAS (Acetylglutamate kinase OS=Staphylococcus aureus (strain MSSA476) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAN (Acetylglutamate kinase OS=Staphylococcus aureus (strain N315) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAM (Acetylglutamate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAE (Acetylglutamate kinase OS=Staphylococcus aureus (strain Newman) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAC (Acetylglutamate kinase OS=Staphylococcus aureus (strain COL) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAAB (Acetylglutamate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
[Close]
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_STAA9 (Acetylglutamate kinase OS=Staphylococcus aureus (strain JH9) GN=argB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:  326 KTIVVKYGGAA---MKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLF 655
            K IV+K GG+    M P+  +N                  P++VHGGGP IN  L    IEP F +GLRVTD  TM I    L+  VN +LV+  N+   +A+GL G+D +LF
Sbjct:    2 KFIVIKIGGSTLSDMHPSIINNIKHLRSNNIY--------PIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLF 106
The following BLAST results are available for this feature:
BLAST of CN188879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARGB_STAAR5.752e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAW7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAT7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAS7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAN7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAM7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAE7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAC7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAAB7.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]
ARGB_STAA97.512e-1239.82Acetylglutamate kinase OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188879 ID=CN188879; Name=CN188879; organism=Citrus sinensis; type=EST; length=696bp
CATTAATCTCTCTGATCTCTGAACCCAAGCAATATCTGCGGAGAATATGG
CCGCCGCCGCCGCTGCCTCCCTAGAAATTGCTCCTTTTTTACAGTCACAG
CTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCAGTCTCCCTCCGTCTT
CAAAATCAAAACCCCACATGTCGAGAATTTCGCTTCGAACCACCGCACCG
AAATAACAAAATCATCCCGCTCTCTCACATCAGCAGCAACAGCCGTAACT
GACACACAGACCCCAGCCGAGTTCCGTGTCGACATTCTTTCCGAATCTCT
TCCCTTCATTCAGAAATTCCGCGGAAAGACCATCGTCGTCAAATACGGCG
GCGCCGCCATGAAACCCAACCAAAAGGACAACCTCCTCGCCTCCGTCGTA
AAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCGTCCTGTCTTGGTCCA
CGGCGGCGGTCCTGAGATCAATTTCTGGCTCAAACGTTTCGGAATCGAGC
CCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCCAACACTATGGAGATC
GTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAGCTTGGTTTCTCTCAT
CAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGGGCATGGACGGGCGCC
TCTTCACGGCCCGGCCCAGCCCAAACTCCGCTAAACTGGGTTTCGT
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