CN188879

Overview
NameCN188879
Unique NameCN188879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_BORA1 (Acetylglutamate kinase OS=Bordetella avium (strain 197N) GN=argB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  245 VTDTQTPAEF-----RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            +TDT  PA       +  ILSE+LP+I++F GKTIVVKYGG AM    ++                   PV+VHGGGP+I+  L+R G +  F  G+RVTDA TME+V  VL G+V + +V +IN+AG  AVGL+G DG L  AR
Sbjct:    1 MTDTPDPAAVLSPAVKAAILSEALPYIRRFHGKTIVVKYGGNAMT---EERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRLGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEAGGKAVGLTGKDGMLLQAR 142          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PETMO (Acetylglutamate kinase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=argB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 64/140 (45.71%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGF 694
            + ++L E+LP+I+KF G   V+K+GG AMK  Q  +                  PV+VHGGGP+IN  L    IE  F +GLRVTD   MEIV MVLVG++NK + SLINK G  AVGLSG D  L  A    +   LG+
Sbjct:   13 KAEVLVEALPYIKKFAGSIAVIKFGGNAMKDPQIKSMVAEDIVLMKYVGL---NPVIVHGGGPDINKMLASLNIETKFVNGLRVTDEKVMEIVEMVLVGKINKEITSLINKTGGKAVGLSGKDANLLLAEKDLSQGDLGY 149          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_NITEU (Acetylglutamate kinase OS=Nitrosomonas europaea GN=argB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  275 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            +V+IL+E+LP+I++F  KTIV+KYGG AM    ++                   PV++HGGGP+I+  LKR G E VF  G+RVTDA TM+IV MVL G +NK +V+LIN+ G  AVGL+G DG    A+
Sbjct:   10 KVNILAEALPYIRRFHDKTIVIKYGGNAMI---EEALKQGFARDVVLLKLVGMNPVIIHGGGPQIDHMLKRVGKEGVFIQGMRVTDAETMDIVEMVLGGLINKEIVNLINRHGGQAVGLTGKDGMFIRAK 136          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_PSEMY (Acetylglutamate kinase OS=Pseudomonas mendocina (strain ymp) GN=argB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  284 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            +LSE+LP+I++F GKT+V+KYGG AM   + +                   PV+VHGGGP+I   LKR  IE  F DG+RVTD  TM++V MVL G+VNKS+V+LIN+ G +A+GL+G D  L  A+
Sbjct:   14 VLSEALPYIRRFVGKTLVIKYGGNAM---ESEELKQGFARDIVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDTATMDVVEMVLGGQVNKSIVNLINQHGGSAIGLTGKDAGLIRAK 137          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CLOK5 (Acetylglutamate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=argB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  284 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLG 691
            IL+ESLP+IQK+RGKTIVVKYGG+AM   Q                      V+VHGGGP I+ +LK+   E VF DGLR TD  TM++V MVL G+VNK LV LI   G  A+GL G+DG +  A        LG
Sbjct:    9 ILAESLPYIQKYRGKTIVVKYGGSAMLDEQLKKYVINDLVLMKCVGINL---VVVHGGGPFISSYLKKLNKESVFIDGLRYTDEETMDVVQMVLSGKVNKDLVKLIQSYGGKALGLCGIDGAMIKAEKISKGVDLG 141          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_CLOK1 (Acetylglutamate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=argB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  284 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLG 691
            IL+ESLP+IQK+RGKTIVVKYGG+AM   Q                      V+VHGGGP I+ +LK+   E VF DGLR TD  TM++V MVL G+VNK LV LI   G  A+GL G+DG +  A        LG
Sbjct:    9 ILAESLPYIQKYRGKTIVVKYGGSAMLDEQLKKYVINDLVLMKCVGINL---VVVHGGGPFISSYLKKLNKESVFIDGLRYTDEETMDVVQMVLSGKVNKDLVKLIQSYGGKALGLCGIDGAMIKAEKISKGVDLG 141          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_AZOSB (Acetylglutamate kinase OS=Azoarcus sp. (strain BH72) GN=argB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 67/145 (46.21%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  233 AATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMK-PNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 664
            +A + T++ TPA  + +IL+E+LP+I++F  KTIV+KYGG AM  P+ KD                   PV+VHGGGP+I   L + G +  F  G+RVTDA TME+V MVL G+VNK +V+LIN+AG  AVGL+G D     A+
Sbjct:    2 SAASSTESVTPA-LKAEILAEALPYIKRFFDKTIVIKYGGNAMTDPHLKD----CFARDVVLLKLVGLNPVVVHGGGPQIETLLAKVGKKGEFVQGMRVTDAETMEVVEMVLGGQVNKEIVNLINQAGGKAVGLTGKDASFIRAK 141          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_AGRT5 (Acetylglutamate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=argB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  254 TQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA 661
            T + +E +  +L+++LPF+QK+  KTIVVKYGG AM  +                      P++VHGGGP+I   L + GIE  F  GLRVTDA T+EIV MVL G +NK +V+LIN+ G  A+GL G DG +  A
Sbjct:    2 TSSESEIQARLLAQALPFMQKYENKTIVVKYGGHAMGDS---TLGKAFAEDIALLKQSGINPIVVHGGGPQIGAMLSKMGIESKFEGGLRVTDAKTVEIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFA 134          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_ACIC1 (Acetylglutamate kinase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=argB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 63/134 (47.01%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  260 TPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA 661
            T  + +   L E+LP++  F G+T+V+KYGG AM                        RPV+VHGGGP+I+  L+R GIEPVF  GLRVT   TM++V MVLVG+V + +V L+N  G  AVG+SG DGRLFTA
Sbjct:    6 TAVQAKAATLVEALPWLATFHGRTVVIKYGGHAMID---PGLAASFAADVVFLRYAGLRPVVVHGGGPQIDAMLRRLGIEPVFAAGLRVTTPETMDVVRMVLVGQVQREVVGLLNAHGPFAVGVSGEDGRLFTA 136          
BLAST of CN188879 vs. ExPASy Swiss-Prot
Match: ARGB_SYNAS (Acetylglutamate kinase OS=Syntrophus aciditrophicus (strain SB) GN=argB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 64/135 (47.41%), Postives = 82/135 (60.74%), Query Frame = 2
Query:  257 QTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA 661
            + P E + +IL E+LP+I++F  +T+V+KYGG AM     D                   PV+VHGGGP+I  +LK+ G +  F  G+RVTD  TM IV MVLVG+VNK +V LIN AG  AVGLSG DG L  A
Sbjct:    5 EKPTE-KAEILLEALPYIRRFYNRTVVIKYGGHAMVD---DELKQSFAKDVLMMKYIGINPVVVHGGGPQIGSFLKKLGKDSKFIQGMRVTDEETMNIVEMVLVGKVNKEIVGLINHAGGKAVGLSGKDGSLIRA 135          
The following BLAST results are available for this feature:
BLAST of CN188879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
ARGB_BORA15.359e-2646.21Acetylglutamate kinase OS=Bordetella avium (strain... [more]
ARGB_PETMO6.999e-2645.71Acetylglutamate kinase OS=Petrotoga mobilis (strai... [more]
ARGB_NITEU6.999e-2647.69Acetylglutamate kinase OS=Nitrosomonas europaea GN... [more]
ARGB_PSEMY9.140e-2648.03Acetylglutamate kinase OS=Pseudomonas mendocina (s... [more]
ARGB_CLOK59.140e-2648.53Acetylglutamate kinase OS=Clostridium kluyveri (st... [more]
ARGB_CLOK19.140e-2648.53Acetylglutamate kinase OS=Clostridium kluyveri (st... [more]
ARGB_AZOSB9.140e-2646.21Acetylglutamate kinase OS=Azoarcus sp. (strain BH7... [more]
ARGB_AGRT51.194e-2544.85Acetylglutamate kinase OS=Agrobacterium tumefacien... [more]
ARGB_ACIC11.194e-2547.01Acetylglutamate kinase OS=Acidothermus cellulolyti... [more]
ARGB_SYNAS1.559e-2547.41Acetylglutamate kinase OS=Syntrophus aciditrophicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188879 ID=CN188879; Name=CN188879; organism=Citrus sinensis; type=EST; length=696bp
CATTAATCTCTCTGATCTCTGAACCCAAGCAATATCTGCGGAGAATATGG
CCGCCGCCGCCGCTGCCTCCCTAGAAATTGCTCCTTTTTTACAGTCACAG
CTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCAGTCTCCCTCCGTCTT
CAAAATCAAAACCCCACATGTCGAGAATTTCGCTTCGAACCACCGCACCG
AAATAACAAAATCATCCCGCTCTCTCACATCAGCAGCAACAGCCGTAACT
GACACACAGACCCCAGCCGAGTTCCGTGTCGACATTCTTTCCGAATCTCT
TCCCTTCATTCAGAAATTCCGCGGAAAGACCATCGTCGTCAAATACGGCG
GCGCCGCCATGAAACCCAACCAAAAGGACAACCTCCTCGCCTCCGTCGTA
AAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCGTCCTGTCTTGGTCCA
CGGCGGCGGTCCTGAGATCAATTTCTGGCTCAAACGTTTCGGAATCGAGC
CCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCCAACACTATGGAGATC
GTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAGCTTGGTTTCTCTCAT
CAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGGGCATGGACGGGCGCC
TCTTCACGGCCCGGCCCAGCCCAAACTCCGCTAAACTGGGTTTCGT
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