CN188878

Overview
NameCN188878
Unique NameCN188878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_AGRVS (Acetylglutamate kinase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=argB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.056e-41
Identity = 96/221 (43.44%), Postives = 127/221 (57.47%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSA-----------KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            + GIE  F  GLRVTD  T+EIV MVL G +NK +V+LIN+ G  A+GL G DG +  A  +  +             LGFVGEV  VD T+++ L  S  IPVIA VA    G +YNINADT                LTDV G+L+   +   L KE+ +   + +I+DG + GGMIPKV  CI ++  GV    I++G+  HS+LLEI T+ GAGT+I
Sbjct:   76 KMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKAKKTVIDPDSHIERVLDLGFVGEVVEVDRTLLDLLAKSEMIPVIAPVAPGRDGHTYNINADTFAGAIAGALRADRLLFLTDVPGVLDKNGE---LFKELSVAQARALIKDGTISGGMIPKVETCIDAINAGVHGVVILNGKTAHSVLLEIFTEHGAGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHIL3 (Acetylglutamate kinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=argB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 96/221 (43.44%), Postives = 126/221 (57.01%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK-----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            + GIE  F  GLRVTD  T+EIV MVL G +NK +V+LIN+ G  A+GL G DG +  A  +  + K           LGFVGEV  VD T+++ L  S  IPVIA VA    G +YNINADT                LTDV G+L+       L+KE+ +     +I DG + GGMIPKV  CI ++  GV+   I++G+  HS+LLEI T+ G GT+I
Sbjct:   76 KMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKARKTVKDPDSNIERVLDLGFVGEVVEVDRTLLDLLARSEMIPVIAPVAPGRDGATYNINADTFAGAIAGALNATRLLFLTDVPGVLDKNG---QLIKELSVAEAHALIADGTISGGMIPKVETCIDAIKAGVQGVVILNGKTAHSVLLEIFTEHGVGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHIEC (Acetylglutamate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=argB PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 96/221 (43.44%), Postives = 127/221 (57.47%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK-----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            + GIE  F  GLRVTD  T+EIV MVL G +NK +V+LIN+ G  A+GL G DG +  A  +  + K           LGFVGEV  VD T+++ L  S  IPVIA VA    G +YNINADT                LTDV G+L+ +     L+KE+ +     +I DG + GGMIPKV  CI ++  GV+   I++G+  HS+LLEI T+ G GT+I
Sbjct:   76 KMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKARKTIKDPDSNIERVLDLGFVGEVVEVDRTLLDLLARSEMIPVIAPVAPGRDGATYNINADTFAGAIAGALNATRLLFLTDVPGVLDKKG---QLIKELSVAEAHALIADGTISGGMIPKVETCIDAIKAGVQGVVILNGKTAHSVLLEIFTEHGIGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_PARL1 (Acetylglutamate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=argB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 95/221 (42.99%), Postives = 128/221 (57.92%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR--------PSPNSAKL---GFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            R GI+  F  GLR+TD  T+EIV MVL G +NK +V+ +N+AG  AVGL G DG L  AR        P  N  KL   GFVGE  +++P +++ +  S  IPVIA V     G +YNINADTV               LTDV G+L        L++ + +   K +++DG + GGMIPK+  CI S+  GV    I+DGRV H++LLE+ T+ GAGT+I
Sbjct:   85 RLGIKSEFSGGLRITDKATVEIVEMVLAGSINKQIVAQLNQAGGRAVGLCGKDGNLVVARKVHQKVHDPESNIEKLLDLGFVGEPEKINPEILDVIQKSDIIPVIAPVGVSRDGHTYNINADTVAGAIAAAMGAARLLLLTDVTGVLGKDG---KLIEALTVAEAKALMKDGTISGGMIPKLETCIESVEGGVEAVVILDGRVRHAVLLELFTELGAGTLI 302          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ALHEH (Acetylglutamate kinase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=argB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 95/222 (42.79%), Postives = 128/222 (57.66%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR-----------PSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R G    F  G+RVTDA TM++V MVL G VNK +V+LIN  G  AVGL+G DG +  AR             P    +G VGEV  +DP+V++ L +   IPVIA +   E G SYNINAD V               LT+  G+L  + +   L+  ++   V  +I+DG + GGM+PK+ C + ++A GV  A IIDGRVEH+ LLE+ TDAG GT+I
Sbjct:   83 ERIGKHTEFVQGMRVTDAETMDVVEMVLGGLVNKEIVNLINSQGGRAVGLTGKDGGMIRARRLRLSHQDAAEQPPEIIDIGHVGEVEHIDPSVVDMLDHGAFIPVIAPIGVGEDGLSYNINADLVAGKIAEVLEAEKLMLLTNTPGVLSKQGE---LLTGLNPARVDALIQDGTIAGGMLPKIRCALDAVAGGVNAAHIIDGRVEHACLLELFTDAGVGTLI 301          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIC1 (Acetylglutamate kinase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=argB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 95/220 (43.18%), Postives = 135/220 (61.36%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA-RPSP----NSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA--ADEFGQS--YNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R GIEPVF  GLRVT   TM++V MVLVG+V + +V L+N  G  AVG+SG DGRLFTA R S     +   LG VGE+  V+PTVI+ L++ GH+PV++S+A   D  G+   YN+NADT                LTDV G+  +  +   ++  +    ++K++    +  GMIPK+  C+R++  GV  A ++DGRV H++LLEI TD G GTM+
Sbjct:   77 RRLGIEPVFAAGLRVTTPETMDVVRMVLVGQVQREVVGLLNAHGPFAVGVSGEDGRLFTAVRRSAVVDGHDVDLGLVGEITEVNPTVIQSLLDDGHVPVVSSIAGGVDSDGRRCVYNVNADTAAAALAVALGAEKLVVLTDVEGLFADWPNTDEVISRLTADELEKLLPG--LAAGMIPKMEACLRAVRGGVAAAHVLDGRVPHAILLEIFTDEGVGTMV 294          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METVS (Acetylglutamate kinase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=argB PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.918e-41
Identity = 89/220 (40.45%), Postives = 131/220 (59.55%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN---------SAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            ++ G  P F  GLRVTD  T+EIV MVL+G++N  +VS + + G  +VGLSG  G+L  AR                LG VGEV RVD  +++ LV   +IPVI+ +  DE  +  N+NAD                 +TDV GI+++  DP +L +++ I  ++KMIE G + GGMIPK+  CI +L +GV++  I++G++ H++LLEI T+ G GTMI
Sbjct:   72 EKMGKVPEFIHGLRVTDEETLEIVKMVLIGKINGDIVSKLEQYGGKSVGLSGKSGQLIKARKKIQYLIRDNEKIEVDLGMVGEVERVDTKLVDILVEKKYIPVISPIGVDEQNKDLNLNADIAAGDIAGAMNAEKLIMVTDVDGIMDDINDPKTLHRKLTISQIEKMIEKGIITGGMIPKIEACINALNKGVQSVHIVNGKIPHAVLLEIFTEEGIGTMI 291          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_MESSB (Acetylglutamate kinase OS=Mesorhizobium sp. (strain BNC1) GN=argB PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.918e-41
Identity = 96/222 (43.24%), Postives = 128/222 (57.66%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR--------PSPNSAK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GIE  F  GLRVTD  T+EIV MVL G +NK +V+LIN  G  A+GL G DG +  A         P  N  +   LGFVGE   VD T+++ L  S  IPV+A VA    G +YNINADT                LTDV G+L+  +    L+ E+ +   + +I+DG + GGMIPKV  CI ++ +GV    I++G+  HS+LLE+ T+ GAGT+I
Sbjct:   77 KRMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINAEGEWAIGLCGKDGNMVFAEKARKTVVDPDSNIERVLDLGFVGEPVEVDRTLLDLLARSEMIPVLAPVAPGRDGYTYNINADTFAGAIAGAVKASRLLFLTDVPGVLDRDK---KLINELTVSQARALIKDGTISGGMIPKVETCIEAIQRGVEGVVILNGKTAHSVLLELFTEHGAGTLI 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHIE6 (Acetylglutamate kinase OS=Rhizobium etli (strain CIAT 652) GN=argB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41
Identity = 96/221 (43.44%), Postives = 126/221 (57.01%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK-----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            + GIE  F  GLRVTD  T+EIV MVL G +NK +V+LIN+ G  A+GL G DG +  A  +  + K           LGFVGEV  VD T+++ L  S  IPVIA VA    G +YNINADT                LTDV G+L+       L+KE+ +     +I DG + GGMIPKV  CI ++  GV+   I++G+  HS+LLEI T+ G GT+I
Sbjct:   76 KMGIESKFEGGLRVTDQKTVEIVEMVLAGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKARKTIKDPDSNIERVLDLGFVGEVVEVDRTLLDLLARSEMIPVIAPVAPGRDGATYNINADTFAGAIAGALNATRLLFLTDVPGVLDKNG---QLIKELSVAEAHALIADGTISGGMIPKVETCIDAIKAGVQGVVILNGKTAHSVLLEIFTEHGIGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_NITSB (Acetylglutamate kinase OS=Nitratiruptor sp. (strain SB155-2) GN=argB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41
Identity = 97/214 (45.33%), Postives = 127/214 (59.35%), Query Frame = -3
Query:  123 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA-DEFGQ-SYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 758
            R  I+  F DG RVT A+ MEIV MVL G +NK +VSL+N  GA A+G+SG D    TARP  +  K G+ G +  +DP+VI  L+    +PVIA +AA ++ G   YNINAD                 LTD  G+L+     +S + E  I+ +KK   DG + GGMIPKV+ C+ ++ +GV  A IIDGRVEHSLLLEI T  G GT + G
Sbjct:   74 RLKIDTTFIDGQRVTTADVMEIVEMVLSGDINKEIVSLLNNHGAKAIGVSGKDAHFITARPK-DFEKFGYTGVIDHIDPSVIHNLLQEQFVPVIAPIAASNQLGHPGYNINADLCASKVAGALKAKKIIFLTDTPGVLDKEGKLISTLTEEKIELLKK---DGTISGGMIPKVDACLEAIDEGVEKAHIIDGRVEHSLLLEIFTSEGIGTQVLG 283          
The following BLAST results are available for this feature:
BLAST of CN188878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_AGRVS4.056e-4143.44Acetylglutamate kinase OS=Agrobacterium vitis (str... [more]
ARGB_RHIL35.297e-4143.44Acetylglutamate kinase OS=Rhizobium leguminosarum ... [more]
ARGB_RHIEC5.297e-4143.44Acetylglutamate kinase OS=Rhizobium etli (strain C... [more]
ARGB_PARL15.297e-4142.99Acetylglutamate kinase OS=Parvibaculum lavamentivo... [more]
ARGB_ALHEH5.297e-4142.79Acetylglutamate kinase OS=Alkalilimnicola ehrliche... [more]
ARGB_ACIC15.297e-4143.18Acetylglutamate kinase OS=Acidothermus cellulolyti... [more]
ARGB_METVS6.918e-4140.45Acetylglutamate kinase OS=Methanococcus vannielii ... [more]
ARGB_MESSB6.918e-4143.24Acetylglutamate kinase OS=Mesorhizobium sp. (strai... [more]
ARGB_RHIE69.035e-4143.44Acetylglutamate kinase OS=Rhizobium etli (strain C... [more]
ARGB_NITSB9.035e-4145.33Acetylglutamate kinase OS=Nitratiruptor sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188878 ID=CN188878; Name=CN188878; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTTTTTTTTTTTTACAGTCCATCAATTTTGTTTATTTTTCAATAGC
CCCTTTAAGAAGTAAAAGAAAAAAAATAATTTAGGAATTAAGACGAGGAT
TAGAATTAGGTTTGATTAGCTAGCCAGTGATCATGGTACCGGCACCAGCA
TCAGTCAAAATCTCAAGAAGCAAGGAGTGTTCAACTCTTCCATCAATAAT
ACTAGCAGTCCTGACACCTTGAGCAAGTGATCTAATACAGCAATTCACTT
TGGGTATCATCCCACCACCAACTTTGCCATCTTCAATCATCTTTTTCACT
CCCTTGATATCGATCTCCTTCACCAAGCTCATTGGATCCTCTCTGTTCTC
AAGTATCCCCGCTACATCAGTCAACAATATCAGCTTCTCAGCACCCAATG
CCGCCGCCAGTTCCCCAGCCACAGTGTCCGCATTGATGTTATAAGATTGC
CCAAACTCATCCGCAGCCACAGAAGCAATCACTGGTATGTGTCCACTGTT
TACCAGAGGCTCAATGACCGTGGGGTCCACGCGGGCTACTTCACCAACGA
AACCCAGTTTAGCGGAGTTTGGGCTGGGCCGGGCCGTGAAGAGGCGCCCG
TCCATGCCCGAGAGCCCAACCGCGGTGGCGCCGGCTTTGTTGATGAGAGA
AACCAAGCTCTTGTTCACCCTCCCCACCAGAACCATGGACACGATCTCCA
TAGTGTTGGCATCAGTGACGCGGAGGCCGTCACGGAAAACGGGCTCGATT
CCGAAACGTTTGA
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