CN188878

Overview
NameCN188878
Unique NameCN188878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIBT (Acetylglutamate kinase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=argB PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 98/222 (44.14%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K+ G E    DG+RVTD  TME+V MVL G VNKS+V+LINK G  A+GL+G DG L  AR           S     LG VGEV  V   V+E    S  IPVIA +  DE G +YNINAD V               LT+++G+L+  +   +L+  +  + V ++IE G + GGMIPKV C + ++  GV +A I+DGRV H+ LLEI TD G GT+I+
Sbjct:   77 KQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENK---NLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLIS 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIBS (Acetylglutamate kinase OS=Acinetobacter baumannii (strain SDF) GN=argB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 98/222 (44.14%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K+ G E    DG+RVTD  TME+V MVL G VNKS+V+LINK G  A+GL+G DG L  AR           S     LG VGEV  V   V+E    S  IPVIA +  DE G +YNINAD V               LT+++G+L+  +   +L+  +  + V ++IE G + GGMIPKV C + ++  GV +A I+DGRV H+ LLEI TD G GT+I+
Sbjct:   77 KQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENK---NLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLIS 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIBC (Acetylglutamate kinase OS=Acinetobacter baumannii (strain ACICU) GN=argB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 98/222 (44.14%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K+ G E    DG+RVTD  TME+V MVL G VNKS+V+LINK G  A+GL+G DG L  AR           S     LG VGEV  V   V+E    S  IPVIA +  DE G +YNINAD V               LT+++G+L+  +   +L+  +  + V ++IE G + GGMIPKV C + ++  GV +A I+DGRV H+ LLEI TD G GT+I+
Sbjct:   77 KQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENK---NLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLIS 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIB5 (Acetylglutamate kinase OS=Acinetobacter baumannii (strain AB0057) GN=argB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 98/222 (44.14%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K+ G E    DG+RVTD  TME+V MVL G VNKS+V+LINK G  A+GL+G DG L  AR           S     LG VGEV  V   V+E    S  IPVIA +  DE G +YNINAD V               LT+++G+L+  +   +L+  +  + V ++IE G + GGMIPKV C + ++  GV +A I+DGRV H+ LLEI TD G GT+I+
Sbjct:   77 KQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENK---NLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLIS 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ACIB3 (Acetylglutamate kinase OS=Acinetobacter baumannii (strain AB307-0294) GN=argB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.856e-40
Identity = 98/222 (44.14%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K+ G E    DG+RVTD  TME+V MVL G VNKS+V+LINK G  A+GL+G DG L  AR           S     LG VGEV  V   V+E    S  IPVIA +  DE G +YNINAD V               LT+++G+L+  +   +L+  +  + V ++IE G + GGMIPKV C + ++  GV +A I+DGRV H+ LLEI TD G GT+I+
Sbjct:   77 KQLGRESDRIDGMRVTDEATMEVVEMVLGGSVNKSIVNLINKHGGRAIGLTGQDGNLLRARKLLMEKQEEDGSIKHIDLGMVGEVTGVKTDVLEMFTQSDFIPVIAPLGVDEKGNTYNINADLVAGKVAEALGAEKLILLTNISGVLDENK---NLLTGLTTQEVDRLIETGVIYGGMIPKVGCALDAVKGGVVSAHIVDGRVPHATLLEIFTDHGVGTLIS 295          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METBU (Acetylglutamate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=argB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.648e-40
Identity = 89/220 (40.45%), Postives = 126/220 (57.27%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP----------NSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            R G +  F  GLR+TD  TMEI  MVLVG +N  +VSLI+K G   VGLSG DG +  A+  P          +   LG+VG+   ++P +I  +  +G+IPVI+ +A D  G + NINADTV               +TDV G+L ++ D  + +  I +  V+++IEDG + GGMIPK+     S+  GV    +IDG + HS+LLE+ TD G GTM+
Sbjct:   80 RMGKKSEFIGGLRITDDETMEIARMVLVGNINTRIVSLISKHGGKGVGLSGKDGNMILAKKKPTQKILIEDIEHDVDLGWVGDTEIINPEIINIVTANGYIPVISPIAMDSEGNALNINADTVAGDLADALNAKKLILMTDVPGVLRDQTDISTRISRIGVDEVEQLIEDGVLSGGMIPKMRSAKASVEGGVDRVHVIDGSISHSVLLELFTDQGIGTMV 299          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_CAMFF (Acetylglutamate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=argB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.989e-40
Identity = 89/211 (42.18%), Postives = 126/211 (59.72%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R  ++  F DGLRVTD + ME+V M L G +NK + SL+NK GA A+G+SG D  +  A+ S +  K GFVGE+  V+  VI  ++N G IPVIA +A     ++YNINAD                 L+D+ G+L+  E  +S + E  I  +K    +G + GGMIPK++ C+  +  GV  A IIDG++ HSLLLEI TD G G++I
Sbjct:   73 ERLNLKSEFIDGLRVTDKDAMEVVEMTLSGLINKEITSLLNKHGARAIGISGKDDNMLKAK-SLDDGKYGFVGEITDVNENVILTIINDGLIPVIAPIAIGSEYETYNINADLCASAIASKLKARKVIFLSDIKGVLDKDEKLISKLNETSINELKN---NGAISGGMIPKIDACLECIKSGVGAAHIIDGKIPHSLLLEIFTDEGIGSVI 279          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_PSEE4 (Acetylglutamate kinase OS=Pseudomonas entomophila (strain L48) GN=argB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.305e-39
Identity = 91/223 (40.81%), Postives = 133/223 (59.64%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR-----------PSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            KR  IE  F DG+RVTDA TM++V MVL G+VNK +V+LIN+ G +A+GL+G D  L  AR            +P    +G VGEV  V+  ++  LV    IPVIA +     G+SYNINAD V               LT++AG+++ +     ++  +  + V ++I DG + GGM+PK+ C + ++  GV ++ IIDGRV +++LLEI TD+G GT+IT
Sbjct:   77 KRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRARKLTVTRQTPEMTTPEIIDIGHVGEVVSVNTDLLNMLVKGDFIPVIAPIGVGANGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQG---QVLTGLTTEQVNELIADGTIYGGMLPKIKCALDAVQGGVNSSHIIDGRVPNAVLLEIFTDSGVGTLIT 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_HYPNA (Acetylglutamate kinase OS=Hyphomonas neptunium (strain ATCC 15444) GN=argB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.305e-39
Identity = 94/224 (41.96%), Postives = 132/224 (58.93%), Query Frame = -3
Query:  126 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK-----------LGFVGEVARVDPTVIEPLV--NSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 758
            + GI   F+DGLRVTD  TME+V MVL G +NKS+V  IN+AG  AVGLSG DG L  A  +  + +           LGFVGE + VD +V+  L+  ++  IPV+A V     G  YN+NADT                +TDVAG+L+ ++    L++EI    V+ +I+DG   GGMIPK+    +S+  GV  A I+DGR  H+LL+E+ T+ GAGT+++
Sbjct:   77 KLGIVSEFKDGLRVTDEATMEVVEMVLSGPINKSIVRAINQAGGKAVGLSGADGNLLRAEKATRTTRDPDSHIEQIVDLGFVGEPSEVDISVLNALLQADAALIPVVAPVGVGADGARYNVNADTAAGALAAALKASRLILMTDVAGVLDKQK---QLIREIPASQVELLIKDGTAVGGMIPKLETAAQSVNHGVGAAVILDGRAPHALLMELFTEHGAGTLVS 297          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_VESOH (Acetylglutamate kinase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=argB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.704e-39
Identity = 90/221 (40.72%), Postives = 135/221 (61.09%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK---------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            ++ G +  F DG+RVTD+ TM++V MVL G VNK +V+LI++ G  ++GL+G DG L +A+   +  K         LG VGEV ++D +VI  L+    IPVIA +   + G SYNINAD V               LT+ +G+L+   +   L+  +D+  +  +IE+G + GGM+PK++C + S+  GV++  IIDGRV H++LLEI TD G GT+IT
Sbjct:   78 EKIGKQSQFIDGMRVTDSETMDVVEMVLGGLVNKEIVNLIHQHGGHSIGLTGKDGSLISAKKLKSDIKPELTSEIIDLGHVGEVDKIDISVINLLLKGDFIPVIAPIGVGKDGFSYNINADLVAGSIAQALNAEKLILLTNTSGLLDANGE---LLTGLDVNIIDSLIENGTIYGGMLPKIDCALSSVRNGVKSTHIIDGRVAHAVLLEIFTDNGVGTLIT 295          
The following BLAST results are available for this feature:
BLAST of CN188878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_ACIBT5.856e-4044.14Acetylglutamate kinase OS=Acinetobacter baumannii ... [more]
ARGB_ACIBS5.856e-4044.14Acetylglutamate kinase OS=Acinetobacter baumannii ... [more]
ARGB_ACIBC5.856e-4044.14Acetylglutamate kinase OS=Acinetobacter baumannii ... [more]
ARGB_ACIB55.856e-4044.14Acetylglutamate kinase OS=Acinetobacter baumannii ... [more]
ARGB_ACIB35.856e-4044.14Acetylglutamate kinase OS=Acinetobacter baumannii ... [more]
ARGB_METBU7.648e-4040.45Acetylglutamate kinase OS=Methanococcoides burtoni... [more]
ARGB_CAMFF9.989e-4042.18Acetylglutamate kinase OS=Campylobacter fetus subs... [more]
ARGB_PSEE41.305e-3940.81Acetylglutamate kinase OS=Pseudomonas entomophila ... [more]
ARGB_HYPNA1.305e-3941.96Acetylglutamate kinase OS=Hyphomonas neptunium (st... [more]
ARGB_VESOH1.704e-3940.72Acetylglutamate kinase OS=Vesicomyosocius okutanii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188878 ID=CN188878; Name=CN188878; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTTTTTTTTTTTTACAGTCCATCAATTTTGTTTATTTTTCAATAGC
CCCTTTAAGAAGTAAAAGAAAAAAAATAATTTAGGAATTAAGACGAGGAT
TAGAATTAGGTTTGATTAGCTAGCCAGTGATCATGGTACCGGCACCAGCA
TCAGTCAAAATCTCAAGAAGCAAGGAGTGTTCAACTCTTCCATCAATAAT
ACTAGCAGTCCTGACACCTTGAGCAAGTGATCTAATACAGCAATTCACTT
TGGGTATCATCCCACCACCAACTTTGCCATCTTCAATCATCTTTTTCACT
CCCTTGATATCGATCTCCTTCACCAAGCTCATTGGATCCTCTCTGTTCTC
AAGTATCCCCGCTACATCAGTCAACAATATCAGCTTCTCAGCACCCAATG
CCGCCGCCAGTTCCCCAGCCACAGTGTCCGCATTGATGTTATAAGATTGC
CCAAACTCATCCGCAGCCACAGAAGCAATCACTGGTATGTGTCCACTGTT
TACCAGAGGCTCAATGACCGTGGGGTCCACGCGGGCTACTTCACCAACGA
AACCCAGTTTAGCGGAGTTTGGGCTGGGCCGGGCCGTGAAGAGGCGCCCG
TCCATGCCCGAGAGCCCAACCGCGGTGGCGCCGGCTTTGTTGATGAGAGA
AACCAAGCTCTTGTTCACCCTCCCCACCAGAACCATGGACACGATCTCCA
TAGTGTTGGCATCAGTGACGCGGAGGCCGTCACGGAAAACGGGCTCGATT
CCGAAACGTTTGA
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