CN188878

Overview
NameCN188878
Unique NameCN188878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_DESVV (Acetylglutamate kinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=argB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.046e-45
Identity = 101/221 (45.70%), Postives = 136/221 (61.54%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            ++  I+  FR+GLRVTD  TM++V MVLVG+VNK +V+ +N AGA AVGLSG DG L  AR           +P    LG VGEV  V+ T++  L   G +PVIA V  D+ G++YNINAD V               LTDVAGIL++ +    L++ ++++    +  DG + GGMIPKV CC+ +L +GV  A IIDGR E+ +LLE+LTD G GT I
Sbjct:   76 EQLNIQSHFREGLRVTDDATMDVVEMVLVGKVNKEIVNQMNLAGAKAVGLSGKDGMLIRARKMEMVISKEAQAPEIIDLGKVGEVMGVNTTLLRSLERDGFVPVIAPVGVDDNGETYNINADAVAGAVAAALKAKRLLLLTDVAGILDHDK---KLIRSVNMREAVNLFSDGTLTGGMIPKVKCCLEALEEGVEKAMIIDGRTENCILLELLTDKGVGTEI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_DESVH (Acetylglutamate kinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=argB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.046e-45
Identity = 101/221 (45.70%), Postives = 136/221 (61.54%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            ++  I+  FR+GLRVTD  TM++V MVLVG+VNK +V+ +N AGA AVGLSG DG L  AR           +P    LG VGEV  V+ T++  L   G +PVIA V  D+ G++YNINAD V               LTDVAGIL++ +    L++ ++++    +  DG + GGMIPKV CC+ +L +GV  A IIDGR E+ +LLE+LTD G GT I
Sbjct:   76 EQLNIQSHFREGLRVTDDATMDVVEMVLVGKVNKEIVNQMNLAGAKAVGLSGKDGMLIRARKMEMVISKEAQAPEIIDLGKVGEVMGVNTTLLRSLERDGFVPVIAPVGVDDNGETYNINADAVAGAVAAALKAKRLLLLTDVAGILDHDK---KLIRSVNMREAVNLFSDGTLTGGMIPKVKCCLEALEEGVEKAMIIDGRTENCILLELLTDKGVGTEI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METTH (Probable acetylglutamate kinase OS=Methanobacterium thermoautotrophicum GN=argB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.347e-44
Identity = 102/223 (45.74%), Postives = 134/223 (60.09%), Query Frame = -3
Query:  126 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP-SPNSAK-----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 758
            + G EP F +GLRVTD  TMEIV MVLVG++N S+VS I   G  A+GLSG D  L  AR  +P+  +           LG VGE+  VDP +I  L ++ +IPVI+ +  D    + N+NADTV               LTDV GILE+  DP +L++ I +  +  +++ G V GGM+PK   CI+++  GV +A IIDGRVEHSLLLEI T  G GTMIT
Sbjct:   70 KMGKEPKFIEGLRVTDEETMEIVKMVLVGKINTSIVSKICYHGGRAIGLSGKDSNLLLARKRAPHVVRDDETGERREIDLGLVGEIESVDPGIINMLTDNNYIPVISPIGVDRDANTLNLNADTVAGEVAAGIGAEKLIVLTDVPGILEDPSDPDTLIRRISVDELSDLVKSGIVEGGMLPKTLTCIQAINDGVSSAHIIDGRVEHSLLLEIFTKKGIGTMIT 292          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GEOSL (Acetylglutamate kinase OS=Geobacter sulfurreducens GN=argB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 101/221 (45.70%), Postives = 134/221 (60.63%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR+GI   F  G+RVTDA TM++V MVL G+VNK +V  +N+ G  AVGLSG DG L   R           +  S  +GFVG+V +V+  +I+ L +   IPVIA V   E G+SYN+NAD V               LTDVAG+   ++   +L+  I +  V  +I+DG + GGMIPKV CC+ ++ +GVR ASIIDGRV H++LLEI TD G GT I
Sbjct:   73 KRYGIVSEFVKGMRVTDAATMQVVEMVLTGQVNKEVVGYLNQHGGRAVGLSGKDGNLLLCRKLLQEVRQDDGTVESVDIGFVGDVVKVNQELIQTLEHGKFIPVIAPVGVGEQGESYNVNADLVAGRVAGALRAEKLILLTDVAGV---KDKAGALLSSIRLDTVPGLIDDGVITGGMIPKVTCCVDAIEEGVRKASIIDGRVLHAVLLEIFTDVGVGTEI 290          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_DESDG (Acetylglutamate kinase OS=Desulfovibrio desulfuricans (strain G20) GN=argB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.919e-44
Identity = 102/222 (45.95%), Postives = 132/222 (59.46%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            ++  I   FR+GLRVTD  TM++V MVLVG+VNK +V+L+N +GA AVGLSG DG+L  AR           +P    LG VGEV  V+  ++  L   G IPVIA V  DE G++YNINAD V               LTDV GIL+       L+  +D     ++ EDG + GGM+PKV CC+ +L  GV  A IIDGR+E+ +LLE+ TD G GT IT
Sbjct:   73 QQLNIPTNFREGLRVTDDATMDVVEMVLVGKVNKQIVNLLNLSGAKAVGLSGKDGQLIRARQMEMVISKEAQAPEIIDLGKVGEVTGVETKLLHSLQRDGFIPVIAPVGVDENGETYNINADLVAGAVAGALGAKRLLLLTDVPGILDKDG---RLISSLDTARTMQLFEDGTLKGGMLPKVKCCLEALEDGVEKAMIIDGRIENCVLLELFTDHGIGTEIT 291          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METCA (Acetylglutamate kinase OS=Methylococcus capsulatus GN=argB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 103/220 (46.82%), Postives = 133/220 (60.45%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP---------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R G    F  G+RVTDA TM++V MVL G VNK +V+LIN+ G  AVGLSG DG L  AR          +P    LG VGEVA +DP V++ LVN   IPVIA +   E G SYNINAD V               LT+  GIL  R+   +L+  + +K V  +IEDG + GGMIPKV C + +L  GV +A IIDGR++H++LLE+ TD G GT++
Sbjct:   81 QRLGKTSEFVQGMRVTDAETMDVVEMVLGGLVNKEIVNLINRQGGAAVGLSGKDGDLIRARKIRMSQPLSDAPEIIDLGHVGEVASIDPAVVDMLVNGDFIPVIAPIGVGEDGCSYNINADLVAGKMAEVLKAEKLILLTNTQGIL-GRDG--ALLTGLSLKEVDALIEDGTISGGMIPKVRCAMDALRGGVNSAHIIDGRIDHAVLLELFTDQGIGTLL 297          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ALKMQ (Acetylglutamate kinase OS=Alkaliphilus metalliredigens (strain QYMF) GN=argB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.118e-44
Identity = 92/212 (43.40%), Postives = 130/212 (61.32%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            K F  E  F DGLRVTD  TMEI  MVL+G+V + +V+ IN+ G  ++G+ G DG +   +  P   +LG VG +  +D  +I+ ++  G+IPVI+ +     G+S+NINAD V               +TDVAG+L ++ D  SL+ +I    +++ IE G + GGMIPK++CC  ++A GV  A IIDGR  HS+LLEI TD G GTMIT
Sbjct:   74 KVFDKESKFVDGLRVTDQATMEITEMVLLGKVCQEIVTRINQNGVRSIGICGKDGSMI--KTVPKDPELGLVGGITSIDTDLIKTIIEKGYIPVISPIGCGPAGESHNINADEVAGKLAAALGAKKLMLITDVAGVLRDQHDEASLISDIKTNEIEEYIETGVIKGGMIPKISCCFDAVANGVERAHIIDGRKSHSMLLEIFTDQGVGTMIT 283          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GRABC (Acetylglutamate kinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=argB PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 8.731e-44
Identity = 104/224 (46.43%), Postives = 130/224 (58.04%), Query Frame = -3
Query:  123 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSA-----------KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 761
            KR  I+  F DGLRVTDA  +E+V MVL G VNK +  LIN+AGA AVG+ G DG L  AR    +A            LGFVGE A +D  VI  L  +G IPVIA V   E GQ+YNINAD+                LTDV G+L+  +    L+ E+    VK  I DG + GGMIPKV CC+ ++ +GVR A I+DGR  H+ LLE+ T+ G GT+I G
Sbjct:   78 KRLAIQSRFVDGLRVTDAAMVEVVEMVLAGTVNKMVAGLINRAGAMAVGICGKDGGLIHARKLQRTAIDPDSHIEKALDLGFVGEPAHIDVRVIHALTGAGLIPVIAPVGIGEDGQTYNINADSAAGAIAGALGAKRLLMLTDVPGVLDTDK---KLIPEMSAADVKAGIADGTITGGMIPKVECCVDAVEKGVRGAVILDGRQPHACLLEMFTEGGIGTLIRG 298          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METJA (Probable acetylglutamate kinase OS=Methanocaldococcus jannaschii GN=argB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.140e-43
Identity = 92/222 (41.44%), Postives = 138/222 (62.16%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            ++ G +P F  GLRVTD  T++IV MVL G++N  +VS ++K G  AVGLSG  GR+  A+      K          LG VGE   V+  ++E L+N+G+IPV++ +  DE G++YN+NADTV               +TDV GI+++  +P +L +++    +K+MIEDG++ GGMIPK    + +L  GV++  II+G++ H+LLLEI T+ G GTMIT
Sbjct:   77 EKMGKKPEFVHGLRVTDEETLDIVEMVLAGKINGDIVSKLSKFGGKAVGLSGKSGRIILAKKKLKKIKTEKGEEIEVDLGRVGETVEVNTELLEILINNGYIPVVSPIGLDEKGEAYNLNADTVAGDIAGALKAEKLILITDVDGIMDDINNPETLHRKLTASELKEMIEDGRIKGGMIPKAESALYALEHGVKSVHIINGKIPHALLLEIFTEEGIGTMIT 298          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GLUDA (Acetylglutamate kinase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=argB PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.489e-43
Identity = 98/222 (44.14%), Postives = 131/222 (59.01%), Query Frame = -3
Query:  123 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 758
            R  I   F DGLRVTDA  ++++ MVL G+VNK +  LIN+AGA AVG+SG DG L TAR    + +          LGFVGE   +DP V+  L  SG IPV+A V   E G++YNINADT                LTDV G+L   ++  +L+ E+  +  ++ I  G + GGMIPKV  C+ ++  G R A I+DGRV H+ LLE+ T+AG GT+I G
Sbjct:   94 RLQIPSTFVDGLRVTDAAMVDVIEMVLAGKVNKQVAGLINQAGALAVGISGKDGGLITARRLQRTTRDASGQERALDLGFVGEPTHIDPRVLYALSGSGLIPVVAPVGIGEAGETYNINADTAAGAIAGAVHATRLLMLTDVPGVL---DETGALIPELTAEEARRGIASGMISGGMIPKVETCLEAVRSGARAAVILDGRVPHACLLELFTEAGPGTLIRG 312          
The following BLAST results are available for this feature:
BLAST of CN188878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_DESVV6.046e-4545.70Acetylglutamate kinase OS=Desulfovibrio vulgaris s... [more]
ARGB_DESVH6.046e-4545.70Acetylglutamate kinase OS=Desulfovibrio vulgaris (... [more]
ARGB_METTH1.347e-4445.74Probable acetylglutamate kinase OS=Methanobacteriu... [more]
ARGB_GEOSL3.919e-4445.70Acetylglutamate kinase OS=Geobacter sulfurreducens... [more]
ARGB_DESDG3.919e-4445.95Acetylglutamate kinase OS=Desulfovibrio desulfuric... [more]
ARGB_METCA5.118e-4446.82Acetylglutamate kinase OS=Methylococcus capsulatus... [more]
ARGB_ALKMQ5.118e-4443.40Acetylglutamate kinase OS=Alkaliphilus metalliredi... [more]
ARGB_GRABC8.731e-4446.43Acetylglutamate kinase OS=Granulibacter bethesdens... [more]
ARGB_METJA1.140e-4341.44Probable acetylglutamate kinase OS=Methanocaldococ... [more]
ARGB_GLUDA1.489e-4344.14Acetylglutamate kinase OS=Gluconacetobacter diazot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188878 ID=CN188878; Name=CN188878; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTTTTTTTTTTTTACAGTCCATCAATTTTGTTTATTTTTCAATAGC
CCCTTTAAGAAGTAAAAGAAAAAAAATAATTTAGGAATTAAGACGAGGAT
TAGAATTAGGTTTGATTAGCTAGCCAGTGATCATGGTACCGGCACCAGCA
TCAGTCAAAATCTCAAGAAGCAAGGAGTGTTCAACTCTTCCATCAATAAT
ACTAGCAGTCCTGACACCTTGAGCAAGTGATCTAATACAGCAATTCACTT
TGGGTATCATCCCACCACCAACTTTGCCATCTTCAATCATCTTTTTCACT
CCCTTGATATCGATCTCCTTCACCAAGCTCATTGGATCCTCTCTGTTCTC
AAGTATCCCCGCTACATCAGTCAACAATATCAGCTTCTCAGCACCCAATG
CCGCCGCCAGTTCCCCAGCCACAGTGTCCGCATTGATGTTATAAGATTGC
CCAAACTCATCCGCAGCCACAGAAGCAATCACTGGTATGTGTCCACTGTT
TACCAGAGGCTCAATGACCGTGGGGTCCACGCGGGCTACTTCACCAACGA
AACCCAGTTTAGCGGAGTTTGGGCTGGGCCGGGCCGTGAAGAGGCGCCCG
TCCATGCCCGAGAGCCCAACCGCGGTGGCGCCGGCTTTGTTGATGAGAGA
AACCAAGCTCTTGTTCACCCTCCCCACCAGAACCATGGACACGATCTCCA
TAGTGTTGGCATCAGTGACGCGGAGGCCGTCACGGAAAACGGGCTCGATT
CCGAAACGTTTGA
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