CN188878

Overview
NameCN188878
Unique NameCN188878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2619 contig Csv1_Contig2619:480..1243. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHOPS (Acetylglutamate kinase OS=Rhodopseudomonas palustris (strain BisB5) GN=argB PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 99/222 (44.59%), Postives = 132/222 (59.46%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS------PNS-----AKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI+  F  GLR+TD  T+EIV MVL G +NK LV  IN+AG  AVGL G DG + TA  +      P+S       LGFVGE  +VD T++  L+    IPV+A +A    GQ++N+NADT                LTDV G+L+  +    L+ E+ IK  +K+I DG + GGMIPKV  CI +L QGV    I+DG+V H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIKSEFAAGLRITDGATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVTASKATRTMVDPDSRIEEVVDLGFVGEPEKVDLTLLNQLIGHELIPVLAPLATSATGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSKQ---LIPELSIKDARKLIADGTISGGMIPKVETCIYALEQGVEGVVILDGKVPHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHOPA (Acetylglutamate kinase OS=Rhodopseudomonas palustris GN=argB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.333e-43
Identity = 99/222 (44.59%), Postives = 133/222 (59.91%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS------PNSA-----KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI+  F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG + +A  +      P+S       LGFVGE  +VD T++  L+    IPV+A +A    GQ++N+NADT                LTDV G+L+  +    L+ E+ IK  +K+I DG + GGMIPKV  CI +L QGV    I+DG+V H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIKSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVSASKATRTMVDPDSRIEEVIDLGFVGEPEKVDLTLLNQLIGHELIPVLAPLATSASGQTFNVNADTFAGAVAGALRAKRLLLLTDVPGVLDQNK---KLIPELSIKDARKLIADGTISGGMIPKVETCIYALEQGVEGVVILDGKVPHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_CAMC5 (Acetylglutamate kinase OS=Campylobacter curvus (strain 525.92) GN=argB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 100/212 (47.17%), Postives = 127/212 (59.91%), Query Frame = -3
Query:  123 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 758
            R  I+  F DGLRVTD   MEIV MVL G +NK + +L+NK GA A+G+SG D  L  AR   N+ K GFVGE+ RV+  V+  L+ +G IPV+A VA D+   SYNINAD                 LTD  GIL+   + +S + E  I  +K   EDG + GGMIPKV+  +  +  GV  A I+DGR+ HSLLLE+ TD G GTMI G
Sbjct:   74 RLHIKSEFVDGLRVTDKEAMEIVEMVLSGNINKEITALLNKNGARAIGVSGKDANLLKARIL-NNGKYGFVGEIERVNTYVLNGLLENGLIPVVAPVATDDEANSYNINADLCASKIASALKAERVIFLTDTRGILDKDGNLISKLNEAHITALK---EDGTINGGMIPKVDAALECVKNGVANAHILDGRLPHSLLLELFTDDGIGTMIKG 281          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_ARCFU (Probable acetylglutamate kinase OS=Archaeoglobus fulgidus GN=argB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 97/220 (44.09%), Postives = 130/220 (59.09%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK---------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            ++FG++P F +GLRVTD  TME+V MVL G+VN  +V+   + G  AVGLSG DG L  AR      K         LGFVGE   V+P +I  L+++G IPV++ VA D  G +YN+NAD V               LTDV GILEN +D  +L+  I +  ++ M   G + GGMIPKV+  I++L  GV  A IIDG   HS+L+E+ T  G GTM+
Sbjct:   69 EKFGLKPKFVEGLRVTDKETMEVVEMVLDGKVNSKIVTTFIRNGGKAVGLSGKDGLLIVARKKEMRMKKGEEEVIIDLGFVGETEFVNPEIIRILLDNGFIPVVSPVATDLAGNTYNLNADVVAGDIAAALKAKKLIMLTDVPGILENPDDKSTLISRIRLSELENMRSKGVIRGGMIPKVDAVIKALKSGVERAHIIDGSRPHSILIELFTKEGIGTMV 288          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_PELCD (Acetylglutamate kinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 100/222 (45.05%), Postives = 129/222 (58.11%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP-----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            K  G E  F  G+RVTD  TM++  MVL G+VNK +V+ IN+    AVGLSG DGRL  AR            +P    +G VG+V  ++  VI  L N+G IPVIA + A   G++YNINAD V               LTDV G+ + +     L+  ID + V  +I +G + GGMIPK+NCCI +L +GV TA IIDGRVEH+ LLEI TD G GT +
Sbjct:   73 KSMGKESRFVQGMRVTDQETMDVAEMVLGGKVNKEIVANINRHDGKAVGLSGKDGRLILARKLEMTAINPDTLTPEIVDVGLVGDVESINTEVITALENNGFIPVIAPIGAGLAGETYNINADIVAGRIAGALRAEKLILLTDVEGVKDKQG---KLISTIDTQRVPDLINNGTITGGMIPKLNCCIDALDEGVHTAHIIDGRVEHACLLEIFTDRGVGTAV 291          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHOCS (Acetylglutamate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=argB PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 99/222 (44.59%), Postives = 134/222 (60.36%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR--------PSPNSAK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R  I+  F DGLRVTD  T+EI  MVL G +NK +V+LIN AG  AVGLSG D  L  AR        P  N  K   LGFVG+  RV+P ++  L  +  IPVIA +   E GQ+YNINADT                LTDVAG+L+ ++    L+ E+ ++  ++ I+DG   GGMIPK+  C+R++  GV  A I+DGRV H+++LE+ T+ GAGT+I
Sbjct:   84 ERLKIKSEFVDGLRVTDKETVEIAEMVLSGSINKQIVALINDAGGDAVGLSGKDDDLIEARKVTRSKRDPDSNIEKVIDLGFVGDPFRVNPGLLHKLQQADIIPVIAPIGIGEDGQTYNINADTAAGAIAAAVNATRLLLLTDVAGVLDKQK---RLIPEMSVEAAQRAIDDGTATGGMIPKIETCLRAVNGGVEAAVILDGRVPHAIVLELFTEGGAGTLI 302          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_METST (Acetylglutamate kinase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=argB PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 96/221 (43.44%), Postives = 134/221 (60.63%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA-RPSPNSAK----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            + G EP F  GLRVTD  TMEIV MVLVG++N  +VS +   G  +VG+SG D  L  A R      K          LG+VG++ RV+  +++ L N+ +IPVI+ +  D+ G + N+NADTV               LTDV GIL + +DP S+++ I    +K++I+DG + GGMIPKV  CI ++  GV+TA I+DGR+ HS+LLEI T  G GTM+
Sbjct:   76 KMGKEPKFIGGLRVTDKETMEIVKMVLVGKINTEIVSKLGFHGGKSVGISGKDSYLVEASRKGLTKVKHENGEVLEVDLGYVGKIDRVNKQLVDDLTNNNYIPVISPLGIDDDGNTLNLNADTVAGSIASEVNAEKLIVLTDVPGILTDPDDPESMIRRIRTDELKELIKDGIITGGMIPKVETCINAVENGVKTAHILDGRLNHSILLEIFTKHGIGTMV 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHOPB (Acetylglutamate kinase OS=Rhodopseudomonas palustris (strain BisB18) GN=argB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 97/222 (43.69%), Postives = 133/222 (59.91%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS------PNSA-----KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI+  F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG + +A  +      P+S       LGFVGE  +VD T++  L+    IPV+A +A    GQ++N+NADT                LTDV G+L+  +    L+ E+ +K  +++I DG + GGMIPKV  CI +L QGV+   IIDG+  H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIKSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVSATKATRTMVDPDSRIEEVIDLGFVGEPEKVDLTLLNQLIGHELIPVLAPLATSSSGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSK---KLIPELSVKDARRLIADGTISGGMIPKVETCIYALEQGVQGVVIIDGKTPHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_RHOP5 (Acetylglutamate kinase OS=Rhodopseudomonas palustris (strain BisA53) GN=argB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 96/222 (43.24%), Postives = 130/222 (58.56%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSA-----------KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI+  F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG + TA  +  +             LGFVGE  +VD T++  L+    IPV+A +A    GQ++N+NADT                LTDV G+L+  +    L+ E+ +K  +++I DG + GGMIPKV  CI +L QGV    IIDG+  H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIKSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVTACKATRTTVDPDSRIEEVIDLGFVGEPEKVDLTLLNQLIGHELIPVLAPLATSATGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSKQ---LIPELSVKDARRLIADGTISGGMIPKVETCIYALEQGVEGVVIIDGKTPHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_NITHX (Acetylglutamate kinase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=argB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 99/222 (44.59%), Postives = 131/222 (59.01%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR--------PSPNSAK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            +R GI+  F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG + TA         P  N  K   LGFVGE  +VD T++  L+    IPV+A +A  + GQ++N+NADT                LTDV G+L+  +    L+ ++ I   +K+I DG + GGMIPKV  CI +L QGV    IIDG+  H++LLE+ TD G GT+I
Sbjct:   78 QRLGIKSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVTASKATRTIADPDSNIEKVVDLGFVGEPEKVDLTLLNQLIGHELIPVLAPLATSKGGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSK---KLIPDLSIGDARKLIADGTISGGMIPKVETCIYALEQGVGGVVIIDGKTPHAVLLELFTDQGTGTLI 296          
The following BLAST results are available for this feature:
BLAST of CN188878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_RHOPS4.333e-4344.59Acetylglutamate kinase OS=Rhodopseudomonas palustr... [more]
ARGB_RHOPA4.333e-4344.59Acetylglutamate kinase OS=Rhodopseudomonas palustr... [more]
ARGB_CAMC55.659e-4347.17Acetylglutamate kinase OS=Campylobacter curvus (st... [more]
ARGB_ARCFU7.391e-4344.09Probable acetylglutamate kinase OS=Archaeoglobus f... [more]
ARGB_PELCD9.653e-4345.05Acetylglutamate kinase OS=Pelobacter carbinolicus ... [more]
ARGB_RHOCS1.261e-4244.59Acetylglutamate kinase OS=Rhodospirillum centenum ... [more]
ARGB_METST1.261e-4243.44Acetylglutamate kinase OS=Methanosphaera stadtmana... [more]
ARGB_RHOPB1.647e-4243.69Acetylglutamate kinase OS=Rhodopseudomonas palustr... [more]
ARGB_RHOP51.647e-4243.24Acetylglutamate kinase OS=Rhodopseudomonas palustr... [more]
ARGB_NITHX1.647e-4244.59Acetylglutamate kinase OS=Nitrobacter hamburgensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188878 ID=CN188878; Name=CN188878; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTTTTTTTTTTTTACAGTCCATCAATTTTGTTTATTTTTCAATAGC
CCCTTTAAGAAGTAAAAGAAAAAAAATAATTTAGGAATTAAGACGAGGAT
TAGAATTAGGTTTGATTAGCTAGCCAGTGATCATGGTACCGGCACCAGCA
TCAGTCAAAATCTCAAGAAGCAAGGAGTGTTCAACTCTTCCATCAATAAT
ACTAGCAGTCCTGACACCTTGAGCAAGTGATCTAATACAGCAATTCACTT
TGGGTATCATCCCACCACCAACTTTGCCATCTTCAATCATCTTTTTCACT
CCCTTGATATCGATCTCCTTCACCAAGCTCATTGGATCCTCTCTGTTCTC
AAGTATCCCCGCTACATCAGTCAACAATATCAGCTTCTCAGCACCCAATG
CCGCCGCCAGTTCCCCAGCCACAGTGTCCGCATTGATGTTATAAGATTGC
CCAAACTCATCCGCAGCCACAGAAGCAATCACTGGTATGTGTCCACTGTT
TACCAGAGGCTCAATGACCGTGGGGTCCACGCGGGCTACTTCACCAACGA
AACCCAGTTTAGCGGAGTTTGGGCTGGGCCGGGCCGTGAAGAGGCGCCCG
TCCATGCCCGAGAGCCCAACCGCGGTGGCGCCGGCTTTGTTGATGAGAGA
AACCAAGCTCTTGTTCACCCTCCCCACCAGAACCATGGACACGATCTCCA
TAGTGTTGGCATCAGTGACGCGGAGGCCGTCACGGAAAACGGGCTCGATT
CCGAAACGTTTGA
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