CN188878

Overview
NameCN188878
Unique NameCN188878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_BRASO (Acetylglutamate kinase OS=Bradyrhizobium sp. (strain ORS278) GN=argB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 100/222 (45.05%), Postives = 133/222 (59.91%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS------PNS-----AKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI   F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG +  A  +      P+S       LGFVGE  +VD T++  L+    IPV+A +A  + GQ++N+NADT                LTDV G+L+  +    L+ EI IK  +K+I DG + GGMIPKV  CI +L QGV+   I+DG+V H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIVSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVRAVKATRTMVDPDSHIEKVVDLGFVGEPDKVDLTLLNQLIGYELIPVLAPLATSKEGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSK---KLIPEISIKDARKLIADGTISGGMIPKVETCIYALEQGVQGVVILDGKVPHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_SYNAS (Acetylglutamate kinase OS=Syntrophus aciditrophicus (strain SB) GN=argB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 96/220 (43.64%), Postives = 129/220 (58.64%), Query Frame = -3
Query:  135 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP-----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 761
            K+ G +  F  G+RVTD  TM IV MVLVG+VNK +V LIN AG  AVGLSG DG L  A              P    +G VG+V  ++  +I  LV  G IPVIA   A + G++YNINAD V               LTDVAG+L  + + ++ +  ++     +MI +G + GGM PKV CC++SL +GVR A I+DGR++H++LLE+ TD G GT
Sbjct:   76 KKLGKDSKFIQGMRVTDEETMNIVEMVLVGKVNKEIVGLINHAGGKAVGLSGKDGSLIRAEKYYLSAEKAKDTPPEIIDIGLVGKVKEINADLITSLVRDGFIPVIAPTGAGDSGETYNINADIVAGAIAAALKAEKLILLTDVAGVLNKQGELINTMNNME---ALEMIHEGVIEGGMFPKVKCCMKSLREGVRKAHIVDGRLKHAILLEMFTDKGIGT 292          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_CLOD6 (Acetylglutamate kinase OS=Clostridium difficile (strain 630) GN=argB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 91/207 (43.96%), Postives = 128/207 (61.84%), Query Frame = -3
Query:  129 IEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 749
            IE  F +GLR TD  TMEIV MVL G+VNK LV+ I+  G  AVGL G+D  +    P  N  +LGFVGE+ +V+  +IE  + SG+I VIA++   + G++YNIN DT                LTDV G+L   ++  SL+ E+ ++ V K+ E+G + GGMIPK+  C+ +L  GV    I+DGRV HS++ E+ TD+G GT+I
Sbjct:   76 IESKFVNGLRYTDEETMEIVKMVLAGKVNKDLVNKIHTKGGKAVGLCGIDNNMILCDPYKNY-ELGFVGEIKKVNVELIESCLKSGYISVIATIGVGDDGETYNINGDTAASAIAKELNADKLILLTDVPGLLREPDEEKSLITEVILEDVDKLFEEGIITGGMIPKIEGCVDALNNGVNRVHILDGRVPHSIITELFTDSGIGTLI 281          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_BRASB (Acetylglutamate kinase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=argB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 97/222 (43.69%), Postives = 134/222 (60.36%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS------PNS-----AKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI   F  GLR+TDA T+EIV MVL G +NK LV  IN+AG  AVGL G DG +  A  +      P+S       LGFVGE  +VD T++  L+    IP++A +A  + GQ++N+NADT                LTDV G+L+  +    L+ E+ +K  +K+I DG + GGMIPKV  CI +L QGV+   I+DG+V+H++LLE+ T+ G GT+I
Sbjct:   78 KRLGIVSEFAAGLRITDAATIEIVEMVLAGSINKQLVGYINEAGGKAVGLCGKDGNMVRAVKATRTMVDPDSHIEKVVDLGFVGEPDKVDLTLLNQLIGYELIPILAPLATSKEGQTFNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSK---KLIPELSVKDARKLIADGTISGGMIPKVETCIYALEQGVQGVVILDGKVQHAVLLELFTNQGTGTLI 296          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GEOMG (Acetylglutamate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=argB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 98/221 (44.34%), Postives = 131/221 (59.28%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAK----------LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR+GI   F  G+RVTDA TM++V MVL G+VNK +V  +N+ G  AVGLSG DG L   R      K          +GFVG+V +V+  +I+ L +   IPVIA V   E G+SYN+NAD V               LTDV G+ +   +   L+  I +  V ++I+ G + GGMIPKV CC+ ++ +GV+ ASIIDGRV H++LLEI TD G GT I
Sbjct:   73 KRYGIVSEFVRGMRVTDAATMQVVEMVLTGQVNKEVVGYLNQHGGRAVGLSGKDGSLLLCRKLLQEVKQGDGSLEKVDIGFVGDVVKVNQELIQTLEHGKFIPVIAPVGVGEDGESYNVNADLVAGRVAGALKAEKLILLTDVEGVKDKAGE---LIPGIVLDDVPRLIDGGVITGGMIPKVTCCVDAIEEGVKKASIIDGRVLHAVLLEIFTDVGVGTEI 290          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GEOLS (Acetylglutamate kinase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=argB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 96/222 (43.24%), Postives = 131/222 (59.01%), Query Frame = -3
Query:  126 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 761
            KR+GI   F  G+RVTD  TM +V MVLVG+VNK +V  +N+ G  AVGL G DG L  ++           +     +G+VG+V +V+  +I+ L   G++PVIA V     G+SYNINAD V               LTD  G+L+  +    L+++I +  + ++IED  + GGMIPKV CC  +L  GV+ A IIDGR+EHS+LLEI TD G GT IT
Sbjct:   73 KRYGIVSEFVRGMRVTDGETMSVVEMVLVGQVNKEVVGYLNQHGGKAVGLCGKDGSLLLSKKLLQEVTGEDGAIEQIDIGYVGDVVKVNTDLIKTLEQGGYLPVIAPVGVGLAGESYNINADVVAGRVAAALNAEKLILLTDTPGVLDKDKQ---LIQKISVAQMHRLIEDESITGGMIPKVVCCAEALNDGVKKAHIIDGRMEHSVLLEIFTDVGIGTEIT 291          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_OLICO (Acetylglutamate kinase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=argB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.791e-42
Identity = 98/221 (44.34%), Postives = 130/221 (58.82%), Query Frame = -3
Query:  129 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA--------RPSPNSAK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 758
            R GI+  F  GLR+TDA+ +EIV MVL G +NK +VS IN AG  AVGLSG DG + TA         P  N  K   LGFVGE  +VD  ++  L+    IPV+A +A    GQ+YN+NADT                LTDVAG+L+  +    L+ E+ IK  +++I DG + GGMIPKV  CI +L  GV    I+DG+  H++LLE+ T+ G GT+I
Sbjct:   76 RLGIKSEFAAGLRITDASAIEIVEMVLAGSINKQIVSHINAAGGKAVGLSGKDGNMVTAVKATRTMIDPDSNIEKVIDLGFVGEPDKVDLALLNQLIGHELIPVLAPLAVSTDGQTYNVNADTFAGAVAGALRAKRLLLLTDVAGVLDKSK---KLIPELSIKDARRLIADGTISGGMIPKVETCIYALEAGVEGVVILDGKTPHAVLLELFTNQGTGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_GEOBB (Acetylglutamate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=argB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.791e-42
Identity = 96/221 (43.44%), Postives = 126/221 (57.01%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP----------SPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR+GI   F  G+RVTD  TM +V MVL G+VN+ +V  IN+ G  A GLSG DG L               S  +  +GFVG+V  V+P +++ L   G IPVIA V     G+SYNINAD V               LTDV+G+     +   L+  I +  V  +I++G V GGMIPKV CC  +LA GV+ A I+DGR+EH++LLEI T+ G GT I
Sbjct:   73 KRYGIVSEFVKGMRVTDKETMGVVEMVLTGQVNREVVGYINQNGGRAAGLSGKDGDLLICEKLLQEVKSEDGSTETVDIGFVGDVVEVNPAILQALEKGGFIPVIAPVGVGRAGESYNINADVVAGKVAAALNAEKLILLTDVSGVKSKEGE---LLSSIPLADVPALIDNGTVTGGMIPKVTCCTDALAAGVKKAHIVDGRIEHAILLEIFTNVGIGTEI 290          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_BRAJA (Acetylglutamate kinase OS=Bradyrhizobium japonicum GN=argB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.791e-42
Identity = 97/222 (43.69%), Postives = 132/222 (59.46%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR--------PSPNSAK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            KR GI+  F  GLR+TDA T+EIV MVL G VNK +V  IN+AG  AVGLSG D  +  A         P  N  K   LGFVG+  +VD T++  L+    IPV+A +A  + GQ+ N+NADT                LTDV G+L+  +    L+ ++ +K  +K+I DG + GGMIPKV  CI +L QGV    IIDG+++H++LLE+ T+ G GT+I
Sbjct:   75 KRLGIQSEFAAGLRITDAATIEIVEMVLAGSVNKQIVGYINEAGGKAVGLSGKDANMVKASKTTRTIVDPGSNIEKAIDLGFVGDPEKVDLTLLNQLIGYELIPVLAPLATSKEGQTLNVNADTFAGAVAGALKAKRLLLLTDVPGVLDKSK---KLIPQLSVKDARKLIADGTISGGMIPKVETCIYALEQGVEGVVIIDGKMQHAVLLELFTNQGTGTLI 293          
BLAST of CN188878 vs. ExPASy Swiss-Prot
Match: ARGB_THEMA (Acetylglutamate kinase OS=Thermotoga maritima GN=argB PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.257e-42
Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = -3
Query:  129 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSAKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 761
            K  GIEPVF++G RVTD  TMEIV MVLVG++NK +V  +N  G  AVG+ G D +L  A        +G+VG+V +V+P ++  L+ + +IPVIA V   E G SYNINADT                LTDV G+L++ +    L+  +     +++I DG V GGMIPKV C + ++  GV    II+G +EH++LLEI +  G GTMI
Sbjct:   71 KDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGK----LISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277          
The following BLAST results are available for this feature:
BLAST of CN188878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_BRASO1.647e-4245.05Acetylglutamate kinase OS=Bradyrhizobium sp. (stra... [more]
ARGB_SYNAS2.150e-4243.64Acetylglutamate kinase OS=Syntrophus aciditrophicu... [more]
ARGB_CLOD62.150e-4243.96Acetylglutamate kinase OS=Clostridium difficile (s... [more]
ARGB_BRASB2.150e-4243.69Acetylglutamate kinase OS=Bradyrhizobium sp. (stra... [more]
ARGB_GEOMG3.668e-4244.34Acetylglutamate kinase OS=Geobacter metallireducen... [more]
ARGB_GEOLS3.668e-4243.24Acetylglutamate kinase OS=Geobacter lovleyi (strai... [more]
ARGB_OLICO4.791e-4244.34Acetylglutamate kinase OS=Oligotropha carboxidovor... [more]
ARGB_GEOBB4.791e-4243.44Acetylglutamate kinase OS=Geobacter bemidjiensis (... [more]
ARGB_BRAJA4.791e-4243.69Acetylglutamate kinase OS=Bradyrhizobium japonicum... [more]
ARGB_THEMA6.257e-4243.60Acetylglutamate kinase OS=Thermotoga maritima GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188878 ID=CN188878; Name=CN188878; organism=Citrus sinensis; type=EST; length=763bp
CCTTTTTTTTTTTTTTTACAGTCCATCAATTTTGTTTATTTTTCAATAGC
CCCTTTAAGAAGTAAAAGAAAAAAAATAATTTAGGAATTAAGACGAGGAT
TAGAATTAGGTTTGATTAGCTAGCCAGTGATCATGGTACCGGCACCAGCA
TCAGTCAAAATCTCAAGAAGCAAGGAGTGTTCAACTCTTCCATCAATAAT
ACTAGCAGTCCTGACACCTTGAGCAAGTGATCTAATACAGCAATTCACTT
TGGGTATCATCCCACCACCAACTTTGCCATCTTCAATCATCTTTTTCACT
CCCTTGATATCGATCTCCTTCACCAAGCTCATTGGATCCTCTCTGTTCTC
AAGTATCCCCGCTACATCAGTCAACAATATCAGCTTCTCAGCACCCAATG
CCGCCGCCAGTTCCCCAGCCACAGTGTCCGCATTGATGTTATAAGATTGC
CCAAACTCATCCGCAGCCACAGAAGCAATCACTGGTATGTGTCCACTGTT
TACCAGAGGCTCAATGACCGTGGGGTCCACGCGGGCTACTTCACCAACGA
AACCCAGTTTAGCGGAGTTTGGGCTGGGCCGGGCCGTGAAGAGGCGCCCG
TCCATGCCCGAGAGCCCAACCGCGGTGGCGCCGGCTTTGTTGATGAGAGA
AACCAAGCTCTTGTTCACCCTCCCCACCAGAACCATGGACACGATCTCCA
TAGTGTTGGCATCAGTGACGCGGAGGCCGTCACGGAAAACGGGCTCGATT
CCGAAACGTTTGA
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