CN182092

Overview
NameCN182092
Unique NameCN182092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: LIS_CLABR (S-linalool synthase OS=Clarkia breweri GN=LIS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 44/165 (26.67%), Postives = 82/165 (49.70%), Query Frame = -2
Query:  262 KICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFAS-GQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLS 753
            K  F+AL+D+ NE+  K ++++G +  ++L++ W    +++L EAKW       P  + YL N + S   H  ++    LLG G     +     +  I S +  + RL +D+ S   E  +G   +Y++ YM+E+   + +D+ +H    I+   +   Q  LS
Sbjct:  579 KTIFEALDDLVNEVRLKCFQQNGQDIKNNLQQLWYETFHSWLMEAKWGKGLTSKPSVDVYLGNAMTSIAAHTMVLTASCLLGPGFPVHQLWSQRRHQDITSLLMVLTRLLNDIQSYLKEEDEGKI-NYVWMYMIENNQASIDDSVRHVQTIINVKKQEFIQRVLS 742          
BLAST of CN182092 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 53/195 (27.18%), Postives = 90/195 (46.15%), Query Frame = -2
Query:  181 MKICFKALNDITNEISNKVYKEHGYNPVHSLRK-AWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECL-SPNPFSASFTRASLNI-ARMVPLMYSYDD 756
            MKI F+     +NE+  +  K  G +    +RK AW     A+L +A+W A+G +P  +EYL NG  ++G+ +  +    L+G  +  + +  I         +    RL DD    + E +D  D S I  Y+ +H + T EDA  H    + +    +N + L   +    S  + S ++ AR +  MY+  D
Sbjct:  377 MKIAFEFWLKTSNELIAEAVKAQGQDMAAYIRKNAWERYLEAYLQDAEWIATGHVPTFDEYLNNGTPNTGMCVLNLIPLLLMGEHLPIDILEQIFLPSRFHHLIELASRLVDDARDFQAE-KDHGDLSCIECYLKDHPESTVEDALNHVNGLLGNCLLEMNWKFLKKQDSVPLSCKKYSFHVLARSIQFMYNQGD 570          
The following BLAST results are available for this feature:
BLAST of CN182092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
LIS_CLABR1.963e-1126.67S-linalool synthase OS=Clarkia breweri GN=LIS PE=2... [more]
TPSD5_ABIGR5.712e-1127.18Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182092 ID=CN182092; Name=CN182092; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTGCTGGATAAATTGAATATTTCTTCTTGAAGATGCTGAACATAAG
ATAAAAGAAACTTCCATAGTATACGTACGTAGGTAAGGAGCTTTATCACT
AACTAGTACACTCCTTGAGTAGGCAAATTATCGAAGAGGAGGGACTTAAT
ATACTCCTCGAGTCTCGGAAGCCTTTGATTGTCATCATAGCTATACATCA
AAGGAACCATTCTGGCAATGTTAAGAGAAGCCCTTGTGAAAGATGCTGAA
AATGGATTTGGGGAGAGGCATTCCTGGTTTAGGCGCTTCCATGCATCTGA
AATCTTATCCATAGCATGCTTTTGTGCATCTTCAGCTGTTACGTCTTGGT
GCTCCATCATGTAGTAATATATGTAAGATCCATCGTTGCCATCTTGATTT
TCATCCTTAGCACTTCCTAAGTCGTCCCAAAGTCGAAGAATTGTTGCGAC
GGACGATACTATGGGCGGGTTGCTGTCAATGAGTCGCACAGTTTCACTGG
TGATGCCATGACCCAGGAGAAAGAAAATGTGCACAAGTCCCAGGTGTACC
CCTGAGCTAACAATCCCATTTTTCAAGTACTCTTCAGCCTTAGGCAATTG
CCCGGAAGCAAACCATTTCGCTTCTGTCAGAAACGCGTTGCACAAACTTC
CCCACGCCTTTCGCAGGGAGTGCACAGGGTTATACCCATGCTCCTTATAC
ACCTTGTTGCTGATTTCATTAGTGATGTCGTTCAGAGCCTTGAAACATAT
CTTCATGCAC
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