CN182085

Overview
NameCN182085
Unique NameCN182085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_LARHH (Bifunctional protein folD OS=Laribacter hongkongensis (strain HLHK9) GN=folD PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 105/211 (49.76%), Postives = 145/211 (68.72%), Query Frame = 2
Query:   14 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAG 646
            A +IDGK ++  +   +A  V+  +E   + P LAV++VG    S+ YV  K+K C + GI+S   DLPE  SEA+L++ V ELN   DV GILVQLPLP+HIN E V+  I+ +KDVDGFHP N+G+LA+K   PL  PCTP+G + +L+ +G++++GK AVV+G+SNIVG P++L LL   ATVTI HS T D    V+ ADI++AA G
Sbjct:    3 AQLIDGKTISAALLDRVAAGVKARTEAGKRAPALAVILVGNNPASEVYVRNKKKGCEKAGIQSLAYDLPESTSEADLLALVDELNARSDVDGILVQLPLPRHINPETVIERINPKKDVDGFHPYNMGRLAVK--MPLLRPCTPRGVMIMLEHAGISVEGKHAVVIGQSNIVGRPMALELLMERATVTICHSRTRDLPEEVKRADIIVAAVG 211          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_PARL1 (Bifunctional protein folD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=folD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.039e-52
Identity = 106/216 (49.07%), Postives = 144/216 (66.67%), Query Frame = 2
Query:   14 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            ATIIDGK +A  +R+ +A EV  L + +   PGLAVV+VG    S+ YV  K  A  E G+ SF+  LP + SEA++++KV ELN  P VHG LVQ P+P HI+++ V+  I   KD DG HPLN G+LA     P  +P TP+GC+ + KR+G  + GK AV++GRSN+VG PV+ LLLK + TVTI HS + D  SI R+ADI++AA G+  M+
Sbjct:    3 ATIIDGKIIATELRARVAVEVARLKKDHSLTPGLAVVLVGNDPASEVYVRNKGIATTEAGMNSFEFKLPAETSEADVLAKVRELNADPAVHGFLVQFPVPNHISQQAVIDAIDPVKDADGLHPLNAGRLA--SGLPAMVPATPEGCVIMAKRAGGDLSGKHAVIIGRSNLVGKPVAQLLLKENCTVTIAHSRSRDLPSIARQADILVAAVGRPGMV 216          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_STRA5 (Bifunctional protein folD OS=Streptococcus agalactiae serotype V GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 2
Query:   20 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_STRA3 (Bifunctional protein folD OS=Streptococcus agalactiae serotype III GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 2
Query:   20 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_STRA1 (Bifunctional protein folD OS=Streptococcus agalactiae serotype Ia GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 101/214 (47.20%), Postives = 147/214 (68.69%), Query Frame = 2
Query:   20 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            +IDGKA++Q +++E+  +V  L E++G +PGLAV++VG    SQ YV  K ++  E G KS  + L E +S+ ELI  +H+ N    +HGILVQLPLP+HIN++K++  I  +KDVDGFHP+N G L   GR P+ +PCTP G +E+ +   V ++GK AV++GRSNIVG P++ LLL  +ATVT+ HS T +   + +EADI+I A GQ   +
Sbjct:    4 LIDGKALSQKMQAELGRKVERLKEQHGIIPGLAVILVGDNPASQVYVRNKERSALEAGFKSETLRLSESISQEELIDIIHQYNEDKSIHGILVQLPLPQHINDKKIILAIDPKKDVDGFHPMNTGHL-WSGR-PMMVPCTPAGIMEMFREYHVDLEGKHAVIIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLSEVTKEADILIVAIGQGHFV 215          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_CLOCE (Bifunctional protein folD OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=folD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 109/216 (50.46%), Postives = 148/216 (68.52%), Query Frame = 2
Query:   14 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            A +++G  +A  +++ +  ++  L  K G  PGLAV+IVG    S+ YV+ K+  C E+GIKSF+  LPE  SE EL+  +  LN    V+GILVQLP+PKHINEEKV+  IS +KD D FHP+N+GKL M G+ P FLPCTP G +ELL+ +G+ I GK  VVVGRSNIVG P ++LLL  +ATVTI HS T + E + R AD+++ A G++  I
Sbjct:    3 AKVLNGTELAAKVKAGLKAKIDELKSK-GINPGLAVIIVGDDPASRVYVNHKKNDCTEIGIKSFEYALPESTSEEELLDLIETLNNDASVNGILVQLPIPKHINEEKVIAAISPDKDADCFHPMNVGKL-MIGK-PEFLPCTPAGVVELLEENGIEISGKNCVVVGRSNIVGKPQAILLLAKNATVTICHSKTANIEEVCRSADVLVVAIGKSEFI 215          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_PASMU (Bifunctional protein folD OS=Pasteurella multocida GN=folD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.156e-52
Identity = 104/216 (48.15%), Postives = 146/216 (67.59%), Query Frame = 2
Query:   14 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            A +I G  +++TI+S++A+++   +++  + PGLAV++VG    SQ YV  KRK+CAE+GI+S   DLPE   E+EL++ + ELN    V GILVQLPLPKHI+  KV+  I+ EKDVDGFHP N+G+L    R P    CTP G ++LL+ +G+ + GK AV+VG SNIVG P++L LL A  TVT+ H  T D    VR+ADI++ A G+   I
Sbjct:    3 AQVISGTELSKTIKSQVAQKIETYTQQGKRSPGLAVILVGADPASQVYVGSKRKSCAEIGIQSKSYDLPETTQESELLALIDELNADTTVDGILVQLPLPKHIDSTKVIERITPEKDVDGFHPYNVGRLCQ--RIPTLRACTPYGVMKLLETTGIDLHGKHAVIVGASNIVGRPMALELLLAGCTVTVTHRFTKDLAHHVRQADILVVAVGKPKFI 216          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_AQUAE (Bifunctional protein folD OS=Aquifex aeolicus GN=folD PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.733e-52
Identity = 108/216 (50.00%), Postives = 148/216 (68.52%), Query Frame = 2
Query:   14 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            A I+DGK++++ IR EI +EV   + K  + P LAV++VG    S+ YV+ KRKAC +VGIKS    LP+ VSE +L+  ++ELN+  +V GILVQLPLPKHI++ +V+  IS EKDVDGFHP N+GKL  +  D  F+PCTP G   LLK  G+ +KGK   +VG   IVG P+SLL+L  +ATV++ H HT D +   +EADI+I+A G   +I
Sbjct:    2 ALILDGKSLSKKIREEIKKEVENFTSKGFRPPALAVILVGNDPASEIYVNNKRKACEKVGIKSLFYHLPQDVSEEKLLGLIYELNMNEEVDGILVQLPLPKHIDQTRVILSISPEKDVDGFHPENMGKLVAQIEDG-FIPCTPLGIDILLKHYGIDVKGKDVTIVGAGFIVGRPLSLLMLWRNATVSVCHIHTKDVKKFTKEADILISATGVPHLI 216          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_ACIF5 (Bifunctional protein folD OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=folD PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.733e-52
Identity = 107/213 (50.23%), Postives = 145/213 (68.08%), Query Frame = 2
Query:   23 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            IDGKA+AQ I ++I+        ++G+ PGLAVV+VG    S+ YV  KR+ CA VGI SF  +LP   +  +L++ + ELNV   V GILVQLPLP H + E+++  I++EKDVDGFHP NIG+LA+  R PL   CTP G + LL+ SG+ IKGK AV+VG SNIVG P++L LL A ATVT+ H  T D  + V  A++++AAAG+  +I
Sbjct:    6 IDGKAIAQKIHADISLRSHAFLRQWGRSPGLAVVLVGADPASRIYVQKKRETCASVGIASFSANLPADTNPQQLLAHIGELNVNDAVDGILVQLPLPPHFDPEEIIEAIAVEKDVDGFHPYNIGRLAL--RAPLLRSCTPAGIMTLLQESGIDIKGKEAVIVGASNIVGRPMALELLLAGATVTVCHRFTRDLAAHVGRAELLVAAAGKPGLI 216          
BLAST of CN182085 vs. ExPASy Swiss-Prot
Match: FOLD_ACIF2 (Bifunctional protein folD OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=folD PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.733e-52
Identity = 107/213 (50.23%), Postives = 145/213 (68.08%), Query Frame = 2
Query:   23 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMI 661
            IDGKA+AQ I ++I+        ++G+ PGLAVV+VG    S+ YV  KR+ CA VGI SF  +LP   +  +L++ + ELNV   V GILVQLPLP H + E+++  I++EKDVDGFHP NIG+LA+  R PL   CTP G + LL+ SG+ IKGK AV+VG SNIVG P++L LL A ATVT+ H  T D  + V  A++++AAAG+  +I
Sbjct:    6 IDGKAIAQKIHADISLRSHAFLRQWGRSPGLAVVLVGADPASRIYVQKKRETCASVGIASFSANLPADTNPQQLLAHIGELNVNDAVDGILVQLPLPPHFDPEEIIEAIAVEKDVDGFHPYNIGRLAL--RAPLLRSCTPAGIMTLLQESGIDIKGKEAVIVGASNIVGRPMALELLLAGATVTVCHRFTRDLAAHVGRAELLVAAAGKPGLI 216          
The following BLAST results are available for this feature:
BLAST of CN182085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_LARHH6.090e-5349.76Bifunctional protein folD OS=Laribacter hongkongen... [more]
FOLD_PARL11.039e-5249.07Bifunctional protein folD OS=Parvibaculum lavament... [more]
FOLD_STRA53.022e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA33.022e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_STRA13.022e-5247.20Bifunctional protein folD OS=Streptococcus agalact... [more]
FOLD_CLOCE3.022e-5250.46Bifunctional protein folD OS=Clostridium celluloly... [more]
FOLD_PASMU5.156e-5248.15Bifunctional protein folD OS=Pasteurella multocida... [more]
FOLD_AQUAE6.733e-5250.00Bifunctional protein folD OS=Aquifex aeolicus GN=f... [more]
FOLD_ACIF56.733e-5250.23Bifunctional protein folD OS=Acidithiobacillus fer... [more]
FOLD_ACIF26.733e-5250.23Bifunctional protein folD OS=Acidithiobacillus fer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182085 ID=CN182085; Name=CN182085; organism=Citrus sinensis; type=EST; length=662bp
GAGGGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGACCA
TCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATGGC
AAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCTCA
AAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAAGT
CGTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCAGC
AAGGTTCACGAGCTTAACGTAATGCCTGATGTACATGGTATATTGGTTCA
ACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGATAA
GCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGCTC
GCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGATG
CCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGCTG
TTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGCTG
CTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCACTGATCC
TGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACAAG
CAATGATGATCA
back to top