CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TM_YEAST (C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=MIS1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 64/129 (49.61%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK AVV+GRS+IVG P++ LL  A+ATVT+ HSHT +   +V +ADIVIAA G    +K  WIK GA VIDVG N V D +KKSG +LVGDVDF    +                  ML+ N L  AKR
Sbjct:  194 GKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACGIPQYVKSDWIKEGAVVIDVGINYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGGVGPMTVAMLVSNVLLAAKR 322          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CAUCR (Bifunctional protein folD OS=Caulobacter crescentus GN=folD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTN---AVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            KGK AVV+GRSN++G P++ +LL AD TVTI HS + D  SIVR+ADIV+AA G+A M+K  W+KPGA VIDVG     A D     +G  RLVGDV F E  +                   LL NTL  AKR+
Sbjct:  159 KGKTAVVIGRSNLMGKPMAQMLLAADCTVTIAHSRSQDLPSIVRQADIVVAAVGRAEMVKADWVKPGAVVIDVGITRFPARDPEAAAAGKTRLVGDVAFDEVREVAGAITPVPGGVGPMTIACLLANTLTAAKRL 293          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CAUCN (Bifunctional protein folD OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTN---AVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            KGK AVV+GRSN++G P++ +LL AD TVTI HS + D  SIVR+ADIV+AA G+A M+K  W+KPGA VIDVG     A D     +G  RLVGDV F E  +                   LL NTL  AKR+
Sbjct:  159 KGKTAVVIGRSNLMGKPMAQMLLAADCTVTIAHSRSQDLPSIVRQADIVVAAVGRAEMVKADWVKPGAVVIDVGITRFPARDPEAAAAGKTRLVGDVAFDEVREVAGAITPVPGGVGPMTIACLLANTLTAAKRL 293          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUSU (Bifunctional protein folD OS=Brucella suis GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUSI (Bifunctional protein folD OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUO2 (Bifunctional protein folD OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUME (Bifunctional protein folD OS=Brucella melitensis GN=folD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUMB (Bifunctional protein folD OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUC2 (Bifunctional protein folD OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRUAB (Bifunctional protein folD OS=Brucella abortus GN=folD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 65/130 (50.00%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+KG W+KPGA VIDVG N +    +  G  RLVGDVDF EA K                  ML+ NTL  A R
Sbjct:  161 GLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARNADILVAAVGRPQMVKGDWVKPGATVIDVGINRIPAPERGEGKTRLVGDVDFAEAEKVAGAITPVPGGVGPMTIAMLMANTLTAACR 290          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
C1TM_YEAST7.928e-2549.61C-1-tetrahydrofolate synthase, mitochondrial OS=Sa... [more]
FOLD_CAUCR1.352e-2448.89Bifunctional protein folD OS=Caulobacter crescentu... [more]
FOLD_CAUCN1.352e-2448.89Bifunctional protein folD OS=Caulobacter crescentu... [more]
FOLD_BRUSU1.352e-2450.00Bifunctional protein folD OS=Brucella suis GN=folD... [more]
FOLD_BRUSI1.352e-2450.00Bifunctional protein folD OS=Brucella suis (strain... [more]
FOLD_BRUO21.352e-2450.00Bifunctional protein folD OS=Brucella ovis (strain... [more]
FOLD_BRUME1.352e-2450.00Bifunctional protein folD OS=Brucella melitensis G... [more]
FOLD_BRUMB1.352e-2450.00Bifunctional protein folD OS=Brucella melitensis b... [more]
FOLD_BRUC21.352e-2450.00Bifunctional protein folD OS=Brucella canis (strai... [more]
FOLD_BRUAB1.352e-2450.00Bifunctional protein folD OS=Brucella abortus GN=f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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