CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_MARMM (Bifunctional protein folD OS=Maricaulis maris (strain MCS10) GN=folD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  250 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHE 537
            GK  VV+GRS +VG P +LL L+ +ATVTI HS T D  S+ R ADI++ A G+  M++G W+KPGA V+DVG N +D   + +G  RLVGD  F E
Sbjct:  159 GKSVVVIGRSILVGKPAALLFLEKNATVTIAHSRTADLPSLCRTADILVPAVGRPEMVRGDWVKPGACVLDVGINRIDAPERGAGKTRLVGDAAFDE 255          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CALS8 (Bifunctional protein folD OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=folD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTL 540
            KGK AVV+GRSNIVG P++LLLL+ +ATVTI HS+T D + I + ADI++AA G+   +    +K GA VIDVG N  D++TKK    +VGDVDF    +                  ML++NTL
Sbjct:  150 KGKHAVVIGRSNIVGKPLALLLLRENATVTICHSYTRDLKDICKTADILVAAVGKPKFVTADMVKEGAVVIDVGINR-DETTKK----IVGDVDFETVRRVASYITPVPGGVGPMTVAMLMKNTL 269          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD1_ACIAD (Bifunctional protein folD 1 OS=Acinetobacter sp. (strain ADP1) GN=folD1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 57/128 (44.53%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            G  AVV+GRSNIVG P++ LLLK   TVT+VHS T + E + ++ADIV+AA G+A MI  S++K  A VIDVG N +    K    RLVGDVDF +A                     L++NTL   +
Sbjct:  167 GLHAVVIGRSNIVGKPMAALLLKESCTVTVVHSKTRNIEQVCQQADIVVAAVGKANMINASYLKADAVVIDVGINRIMTHEKT---RLVGDVDFEDALPMVSAITPVPGGVGPMTIAYLMKNTLQAVR 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_THISH (Bifunctional protein folD OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=folD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  166 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTL 540
            KG+ AVVVG SNIVG P++L L+ A ATVT+ H  TTD    V  ADIV+ A G+  ++ G WIKPGA VIDVG N ++D       RLVGDV F  A +                  ML++NT+
Sbjct:  158 KGRNAVVVGASNIVGRPMALELMLAGATVTVCHRFTTDTAEHVARADIVVVAVGRPDLVPGEWIKPGATVIDVGMNRLEDG------RLVGDVSFAAAAERAAWITPVPGGVGPMTVAMLMKNTI 276          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_THIDA (Bifunctional protein folD OS=Thiobacillus denitrificans (strain ATCC 25259) GN=folD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 56/128 (43.75%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  157 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGA 540
            +GK AV+VG SNIVG P+SL LL A  T+T+ HS T D ES VR A++++   G+  MI G W++ GA VIDVG N + D       +LVGDVDF  A +                   LL NTL+ A
Sbjct:  158 RGKNAVMVGASNIVGRPMSLELLLAGCTITVCHSATRDLESFVRSAEVLVVGVGRPRMIPGDWVREGAIVIDVGINRLADG------KLVGDVDFDTAVERAGWITPVPGGVGPMTVATLLENTLEAA 279          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SYNJB (Bifunctional protein folD OS=Synechococcus sp. GN=folD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 60/141 (42.55%), Postives = 78/141 (55.32%), Query Frame = -2
Query:  115 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL*NRPRLCS 537
            G++AVVVGRS +VG P+SL+LL ADATVT+ HS T D   + R ADIV+ A G+  +++   +KPGA VIDVG N ++  T     +LVGDVD+    +                  MLL NTL   K       R  LCS
Sbjct:  159 GRKAVVVGRSILVGKPLSLMLLAADATVTLAHSRTPDLAEVTRAADIVVMAVGRPRLLRADMVKPGAVVIDVGINRIE--TPTGAEQLVGDVDYEAVKELAAAITPVPGGVGPMTVTMLLANTLQSYKL------RSHLCS 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS5 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=folD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 60/129 (46.51%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVVVGRSNIVG P++ LLL    TVTI HS T D  ++ R ADI++AA G+  MI G +IKPGA VIDVG N ++   K    +LVGDVDF  A +                   LL NTL    R
Sbjct:  159 GLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTKDLAAVCRGADILVAAVGRPEMITGEFIKPGATVIDVGINRIERDGKT---KLVGDVDFASAAEVAGAITPVPGGVGPMTIACLLANTLTACCR 284          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOPT (Bifunctional protein folD OS=Rhodopseudomonas palustris (strain TIE-1) GN=folD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGY-RLVGDVDFHEA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS T D  ++ R+AD+V AA G+A M+KG WIKPGA VIDVG N      K  G  +L+GDV F EA
Sbjct:  158 EGMNALVIGRSNLVGKPLVQLLLNENATVTIAHSRTRDLPALCRQADLVFAAVGKAEMVKGDWIKPGATVIDVGINRTPG--KDGGKDKLLGDVAFAEA 254          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOPA (Bifunctional protein folD OS=Rhodopseudomonas palustris GN=folD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGY-RLVGDVDFHEA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS T D  ++ R+AD+V AA G+A M+KG WIKPGA VIDVG N      K  G  +L+GDV F EA
Sbjct:  158 EGMNALVIGRSNLVGKPLVQLLLNENATVTIAHSRTRDLPALCRQADLVFAAVGKAEMVKGDWIKPGATVIDVGINRTPG--KDGGKDKLLGDVAFAEA 254          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_GLUDA (Bifunctional protein folD OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=folD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  145 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 540
            +G  AV++G SN+VG P++ LLL    TVT+ H  T DP ++ R+ DI++ A G   +++G WIKPGAAVIDVG   +   + K+  RLVGDV F EA                     LL NTL  A+R++
Sbjct:  176 RGLHAVIIGASNLVGRPMARLLLAEGCTVTVGHIDTRDPAALARQGDILVVATGCHGLVRGDWIKPGAAVIDVGITRISLPSGKT--RLVGDVAFDEAVTRAGCITPVPGGVGPMTIACLLNNTLAAARRIV 305          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_MARMM6.945e-2151.55Bifunctional protein folD OS=Maricaulis maris (str... [more]
FOLD_CALS86.945e-2146.40Bifunctional protein folD OS=Caldicellulosiruptor ... [more]
FOLD1_ACIAD6.945e-2144.53Bifunctional protein folD 1 OS=Acinetobacter sp. (... [more]
FOLD_THISH9.071e-2145.60Bifunctional protein folD OS=Thioalkalivibrio sp. ... [more]
FOLD_THIDA9.071e-2143.75Bifunctional protein folD OS=Thiobacillus denitrif... [more]
FOLD_SYNJB9.071e-2142.55Bifunctional protein folD OS=Synechococcus sp. GN=... [more]
FOLD_RHOS51.185e-2046.51Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_RHOPT1.185e-2054.55Bifunctional protein folD OS=Rhodopseudomonas palu... [more]
FOLD_RHOPA1.185e-2054.55Bifunctional protein folD OS=Rhodopseudomonas palu... [more]
FOLD_GLUDA1.185e-2040.91Bifunctional protein folD OS=Gluconacetobacter dia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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