CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOP2 (Bifunctional protein folD OS=Rhodopseudomonas palustris (strain HaA2) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS + D  ++ R+AD+V AA G+  M+KG WIKPGA VIDVG N    S      +LVGDV F EA
Sbjct:  158 EGMNAIVIGRSNLVGKPLVQLLLNENATVTIAHSRSRDLPALCRQADLVFAAVGRPEMVKGDWIKPGATVIDVGINRT-PSPDGGKDKLVGDVAFAEA 254          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHIL3 (Bifunctional protein folD OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 57/130 (43.85%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV-DDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSN+ G P++ LLL A+ATVTI HS T +   + R ADI++AA G+  M++  W+KPGA VIDVG N V    T +   RLVGDV F E                     ML+ NT+  A R
Sbjct:  161 GLNAVVIGRSNLFGKPMAQLLLNANATVTIAHSRTKNLAEVCRNADILVAAVGRPEMVRADWVKPGATVIDVGINRVAAPETGEGKTRLVGDVAFEEVSAVASTITPVPGGVGPMTIAMLMANTVIAAHR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_HYPNA (Bifunctional protein folD OS=Hyphomonas neptunium (strain ATCC 15444) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  166 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTL 537
            GK  VV+GRS +VG P +LL L  + TVTI HS T D  ++ R ADI++ A G+  M++G W+KPGAAVIDVG N +    K  G  RLVGD  +    +                   LLRNT+
Sbjct:  156 GKNVVVIGRSILVGKPAALLFLAENCTVTIAHSKTADLANVCRSADILVPAVGRPEMVRGDWVKPGAAVIDVGINRIPAPEKGEGKTRLVGDAHYESCAEVAGFITPVPGGVGPMTIACLLRNTV 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_HALHL (Bifunctional protein folD OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  139 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 540
            +G+ AVV+G+SNIVG P++L LL A  TVT+ HS T +    VR+AD+V+A+ G+  +I+G WI  GA VIDVG N +D        +L GDVDF  A +                   LL NTLD A+   EL
Sbjct:  158 EGRDAVVLGQSNIVGRPMTLELLNARCTVTVCHSRTRNVAERVRQADLVVASVGKPGLIQGDWIGEGAVVIDVGINRLDSG------KLTGDVDFEAASQRASWITPVPGGVGPMTVATLLENTLDAARNRDEL 285          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_HAHCH (Bifunctional protein folD OS=Hahella chejuensis (strain KCTC 2396) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +GK A+VVG SNIVG P+ L LL A  TVTI H  T +  + V +ADIV+ A G+  ++KG WIKPGA VIDVG N  DD        LVGD++F+EA +                   L+ NTL  A  +
Sbjct:  167 RGKDALVVGASNIVGRPMGLELLLAGCTVTITHRFTVNLPAKVSQADIVVVAVGRPGIVKGEWIKPGAIVIDVGINRRDDGA------LVGDIEFNEAAERASWITPVPGGVGPMTVATLMENTLYAANHL 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_DELAS (Bifunctional protein folD OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=folD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +GK AVV+GRSNIVG P++++LL A+ATVTI HS T D  ++ R+ADIV+AA G+  ++     KPGA VIDVG N  D+       +L GDVDF    +                  MLL NT++ A+R
Sbjct:  158 RGKHAVVIGRSNIVGKPMAMMLLAANATVTICHSGTADLAAMTRQADIVVAAVGKRNVLTADMCKPGAVVIDVGMNRNDEG------KLCGDVDFDGVKEVAGFITPVPGGVGPMTITMLLVNTMEAAER 281          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_SPHWW (Bifunctional protein folD 2 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  250 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHE 540
            KG  AVV+G+SNIVG P+++LLL+ +ATVT+ H  T     IVR+ADI++AAAG   ++KG W+K GA +IDVG   +     K+  RLVGDV F E
Sbjct:  169 KGMDAVVIGKSNIVGKPIAMLLLEREATVTVTHIETRGLPDIVRKADIIVAAAGAPRLVKGYWVKEGAVIIDVGITRLPGEGGKT--RLVGDVAFDE 263          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_TRIEI (Bifunctional protein folD OS=Trichodesmium erythraeum (strain IMS101) GN=folD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = -2
Query:  142 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 540
            +GK AV++GRS +VG P++L+LL+A++TVTI HS + + E+I ++ADI+I A G+  MI    +KPGA VIDVG N V D    S  +LVGDV F+   +                  MLL+NT++    ++E
Sbjct:  157 QGKHAVILGRSILVGKPMALMLLEANSTVTIAHSRSKNLEAITKKADILITAVGRPKMISAEMVKPGAVVIDVGINRVIDEAGNS--QLVGDVQFNSVAQVAEYITPVPGGIGPMTVAMLLQNTVERWSTLVE 287          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS4 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=folD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVVVGRSNIVG P++ LLL    TVTI HS T D  ++ R ADI++AA G+  MI G ++KPGA VIDVG N ++   K    +LVGDVD+  A +                   LL NTL    R
Sbjct:  159 GLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTRDLAAVCRGADILVAAVGRPEMITGDFVKPGATVIDVGINRIERDGKT---KLVGDVDYASAAEVAGAITPVPGGVGPMTIACLLANTLTACCR 284          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOS1 (Bifunctional protein folD OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=folD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVVVGRSNIVG P++ LLL    TVTI HS T D  ++ R ADI++AA G+  MI G ++KPGA VIDVG N ++   K    +LVGDVD+  A +                   LL NTL    R
Sbjct:  159 GLNAVVVGRSNIVGKPMAQLLLGESCTVTIAHSRTRDLAAVCRGADILVAAVGRPEMITGDFVKPGATVIDVGINRIERDGKT---KLVGDVDYASAAEVAGAITPVPGGVGPMTIACLLANTLTACCR 284          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_RHOP22.639e-2053.06Bifunctional protein folD OS=Rhodopseudomonas palu... [more]
FOLD_RHIL32.639e-2043.85Bifunctional protein folD OS=Rhizobium leguminosar... [more]
FOLD_HYPNA2.639e-2042.40Bifunctional protein folD OS=Hyphomonas neptunium ... [more]
FOLD_HALHL2.639e-2042.54Bifunctional protein folD OS=Halorhodospira haloph... [more]
FOLD_HAHCH2.639e-2043.51Bifunctional protein folD OS=Hahella chejuensis (s... [more]
FOLD_DELAS2.639e-2043.85Bifunctional protein folD OS=Delftia acidovorans (... [more]
FOLD2_SPHWW2.639e-2051.55Bifunctional protein folD 2 OS=Sphingomonas wittic... [more]
FOLD_TRIEI3.447e-2041.35Bifunctional protein folD OS=Trichodesmium erythra... [more]
FOLD_RHOS43.447e-2044.96Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]
FOLD_RHOS13.447e-2044.96Bifunctional protein folD OS=Rhodobacter sphaeroid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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