CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_DINSH (Bifunctional protein folD OS=Dinoroseobacter shibae (strain DFL 12) GN=folD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = -2
Query:  256 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 537
            G  AVV+GRSN+ G P+  LLL+ +ATVT+ HS T D   + R ADI++AA G+A M+K  W+KPGA VIDVG             RL+GDVDF
Sbjct:  159 GLEAVVIGRSNLFGKPMGQLLLRENATVTMAHSRTRDLAQVCRRADILVAAVGRAEMVKADWVKPGATVIDVGITRQPHPDDPDKTRLLGDVDF 252          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BREBN (Bifunctional protein folD OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=folD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 58/129 (44.96%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK AVV+GRSNIVG PVSLLL + +ATVT+ HS T + E   ++ADI++ A G+A MI    +KPGA VIDVG N ++        +LVGDV F E                     MLL+NT+  AK+
Sbjct:  158 GKHAVVIGRSNIVGKPVSLLLQQENATVTMCHSRTQNLEEYTQKADILVVATGRAHMIGKEHVKPGAVVIDVGVNRIETG------KLVGDVKFDEVKDVASFITPVPGGVGPMTITMLLKNTVAAAKK 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_AZOSE (Bifunctional protein folD OS=Azoarcus sp. (strain EbN1) GN=folD PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +G  AVV+GRSNIVG P+++LL  A ATVT+ HS T D     R ADI++AA G+   + G  IKPGA VIDVG N + +       +L GDVDF  A +                  MLL NT++ A+RV
Sbjct:  157 QGAEAVVIGRSNIVGKPMAMLLTNAGATVTVTHSKTRDLAFHTRRADILVAAIGKPRFVTGDMIKPGAVVIDVGINRLTEGPDAG--KLCGDVDFESAKEVASLITPVPGGVGPMTITMLLANTVESAERV 285          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_POLSJ (Bifunctional protein folD OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=folD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +GK AVV+GRSNIVG P++++LL+ +ATVTI HS T D +++  +AD+++AA G+  ++    +KPGA VIDVG N  D+       +L GDVDF    +                  MLL NTL+ A+R+
Sbjct:  157 RGKHAVVIGRSNIVGKPMAMMLLQKNATVTICHSATKDLKAMTLQADVIVAAVGKRNVLTADMVKPGAVVIDVGMNRNDEG------KLCGDVDFEGVKEVAGYITPVPGGVGPMTITMLLVNTLESAERL 281          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_POLNA (Bifunctional protein folD OS=Polaromonas naphthalenivorans (strain CJ2) GN=folD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +GK AVV+GRSNIVG P++L+LL+ +ATVTI HS T D +++  +AD+++AA G+  +++   +KPGA VIDVG N  ++       +L GDVDF    +                  MLL NTL+ A+R
Sbjct:  157 RGKHAVVIGRSNIVGKPMALMLLQKNATVTICHSATADLKAMTLQADVIVAAVGKRNVLRADMVKPGAVVIDVGMNRNEEG------KLCGDVDFDGVKEVAGYITPVPGGVGPMTITMLLVNTLEAAER 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PARUW (Bifunctional protein folD OS=Protochlamydia amoebophila (strain UWE25) GN=folD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 44/98 (44.90%), Postives = 70/98 (71.43%), Query Frame = -2
Query:  256 GKRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 537
            GK A+++GRSNIVG P++ LL+++    +ATVT+ H +T + + +  +AD++I A GQ  +I    +K G  ++DVG N + DS+KK+GY++VGDVDF
Sbjct:  154 GKHALIIGRSNIVGKPMAALLMQSYPGGNATVTVAHRYTKNLKELCLQADLIIVAIGQPKLITADMVKEGVIIVDVGINKIHDSSKKNGYQIVGDVDF 251          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_JANMA (Bifunctional protein folD OS=Janthinobacterium sp. (strain Marseille) GN=folD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK AVV+GRSN VG P++LLLL+A+ATVTI HS T D     R+AD+V+AA G+   +    IKPGA VIDVG N  D+       +L GDVDF  A +                  MLL NT++ A+R
Sbjct:  158 GKHAVVIGRSNTVGKPMALLLLQANATVTICHSGTADLAYHTRQADVVVAATGRRNTLTAEMIKPGAIVIDVGINRDDNG------KLCGDVDFANAKEVASYITPVPGGVGPMTITMLLVNTIEAAER 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRAJA (Bifunctional protein folD OS=Bradyrhizobium japonicum GN=folD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS + D   +V+ AD+V AA G+  M++G W+KPGA VID+G + +     K+  RLVGDV + EA
Sbjct:  158 EGLNAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRDLPGLVKRADLVYAAVGKPEMVRGDWLKPGATVIDIGISRIPKEDGKT--RLVGDVAYQEA 253          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD1_SINMW (Bifunctional protein folD 1 OS=Sinorhizobium medicae (strain WSM419) GN=folD1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSN+ G P+  LLL A+ATVT  HS T +   + R ADI++AA G+  M+K  W+KPGA VIDVG N V    +  G  +LVGDV F E  +                  ML+ NT+  A R
Sbjct:  161 GLSAVVIGRSNLFGKPMGALLLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAPERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHR 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SYNJA (Bifunctional protein folD OS=Synechococcus sp. (strain JA-3-3Ab) GN=folD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            G++AVVVGRS +VG P+SL+LL ADATVT+ HS T +   + R ADIV+ A G+  ++    +KPGA V+DVG N + D       +LVGDVD+    +                  MLL NTL+  K
Sbjct:  159 GRKAVVVGRSLLVGKPLSLMLLAADATVTVAHSRTPNLAEVTRSADIVVMAVGRPRLLTADMVKPGAVVVDVGINRIQD--PDGSEQLVGDVDYEAVKERAAAITPVPGGVGPMTVTMLLANTLESYK 284          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_DINSH4.502e-2051.06Bifunctional protein folD OS=Dinoroseobacter shiba... [more]
FOLD_BREBN4.502e-2044.96Bifunctional protein folD OS=Brevibacillus brevis ... [more]
FOLD_AZOSE4.502e-2043.51Bifunctional protein folD OS=Azoarcus sp. (strain ... [more]
FOLD_POLSJ5.880e-2041.22Bifunctional protein folD OS=Polaromonas sp. (stra... [more]
FOLD_POLNA5.880e-2041.54Bifunctional protein folD OS=Polaromonas naphthale... [more]
FOLD_PARUW5.880e-2044.90Bifunctional protein folD OS=Protochlamydia amoebo... [more]
FOLD_JANMA5.880e-2045.74Bifunctional protein folD OS=Janthinobacterium sp.... [more]
FOLD_BRAJA5.880e-2048.98Bifunctional protein folD OS=Bradyrhizobium japoni... [more]
FOLD1_SINMW5.880e-2043.08Bifunctional protein folD 1 OS=Sinorhizobium medic... [more]
FOLD_SYNJA7.679e-2042.19Bifunctional protein folD OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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