CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CHLPD (Bifunctional protein folD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 65/138 (47.10%), Postives = 82/138 (59.42%), Query Frame = -2
Query:  139 KGKRAVVVGRSNIVGLPVS-LLLLKADAT---VTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 540
            KGK  VVVGRSNIVG P++ L++ K DAT   VT+ HS T D  S  ++ADI+IAA G+A  I    +KPGA VIDVG N ++D + KSGYRLVGDVD+                       MLL+NTL   +R+  L
Sbjct:  158 KGKHCVVVGRSNIVGKPMANLMMQKLDATNCTVTVCHSATRDIPSFTKQADILIAALGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYDGVAALASAITPVPGGVGPMTIAMLLKNTLQSFRRINNL 295          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_AZOC5 (Bifunctional protein folD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=folD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 63/129 (48.84%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVVVGRSNIVG P + LLL+ D TVTI HS T D   + R+ADI++AA G+  M++G WIKPGA VIDVG N V  +  K+  RLVGDV + EA                     LL+NTL  A+R
Sbjct:  160 GLNAVVVGRSNIVGKPAAQLLLREDCTVTIAHSRTRDLPGMCRQADILVAAVGRPEMVRGDWIKPGATVIDVGINRVPKADGKT--RLVGDVAYEEALGVAGLITPVPGGVGPMTIACLLQNTLTAARR 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SPHAL (Bifunctional protein folD OS=Sphingopyxis alaskensis GN=folD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.712e-24
Identity = 62/129 (48.06%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK A+V+GRS +VG P+  LLL A+ TVT+ HS T D  ++VR ADIV+AA G+A M+KG WIKPGA VIDVG N +  +   +  RLVGDVD+  A                     LLRNTL  A R
Sbjct:  164 GKDAIVIGRSILVGKPMGQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRLPPADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHR 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_GEOMG (Bifunctional protein folD 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=folD2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.766e-24
Identity = 67/132 (50.76%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  142 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 537
            GK  VVVGRSNIVG PV+L+ L+  ATVTI HS T D  S V+EAD+VIAA G   MIKG WIK GA VIDVG N V +       +LVGDV+F  A +                  MLL NTL+ AK+  E
Sbjct:  157 GKEVVVVGRSNIVGKPVALMCLQQHATVTICHSKTRDLPSKVKEADVVIAAVGVPEMIKGEWIKEGAVVIDVGVNRVGEK------KLVGDVEFAAASQRASAITPVPGGVGPMTITMLLYNTLEAAKKTGE 282          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD3_PSEMY (Bifunctional protein folD 3 OS=Pseudomonas mendocina (strain ymp) GN=folD3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.145e-23
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK AVV+GRSNIVG P++ LLLKA  +VT+VHS + + +++ R+ADIV+AA G+  ++   W+KPGA VIDVG N +D++ +    RLVGDVDF  A                     L++NTL  A+
Sbjct:  162 GKHAVVIGRSNIVGKPMAALLLKAHCSVTVVHSKSANLKTLCRQADIVVAAVGRPRLVDADWLKPGAVVIDVGINRIDENGRS---RLVGDVDFDSALPQVSAITPVPGGVGPMTIAYLMKNTLVAAR 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_DICNV (Bifunctional protein folD OS=Dichelobacter nodosus (strain VCS1703A) GN=folD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 64/132 (48.48%), Postives = 80/132 (60.61%), Query Frame = -2
Query:  148 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTN--AVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 537
            GK+A+++GRSNIVG P++ LLL+  ATVTI HS T D  ++ R+ADIVIAA GQ  ++KG WIK GA V+DVG N  AV D TK     LVGDV F  A +                   LL+NTL  AK +
Sbjct:  160 GKKALIIGRSNIVGKPMAALLLQQHATVTIAHSKTPDVPALCRQADIVIAAVGQPELVKGDWIKSGAVVLDVGINRIAVGDKTK-----LVGDVAFESAKEVAAAITPVPGGIGPMTIACLLKNTLTLAKAI 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_ANADE (Bifunctional protein folD OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=folD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            KGKRA+VVGRSNIVG P++++LL+  ATVTI HS T D    V  ADI++AA G+A ++KG+W+K GA VIDVG N + D       +LVGDV+F  A                    MLL NT++ AKRV
Sbjct:  156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG------KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRV 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD3_SPHWW (Bifunctional protein folD 3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 63/129 (48.84%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P++ LLL  + TVTI HS T D   +VR ADIV+AA G+  M++G WI+PGA VIDVG N V    +    RLVGDV F EA                    +LLRNTL  A R
Sbjct:  165 GLEAVVIGRSNIVGKPMAALLLAENCTVTIAHSRTRDLAEVVRRADIVVAAVGRPEMVRGDWIRPGATVIDVGINRV-PGAEPGKTRLVGDVAFAEAAAVAGAITPVPGGVGPMTIAVLLRNTLVAAHR 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHOCS (Bifunctional protein folD OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=folD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 67/134 (50.00%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAV---DDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +G  AVVVGRSNIVG P++ LLL+A+ATVT+ HSHT D   + R ADI+IAA G+  MI+GSWIK GA VIDVG N V   D +   +G  R+VGDV F EA                     LL NTL  A R
Sbjct:  159 RGLNAVVVGRSNIVGKPMANLLLQANATVTVAHSHTVDLPEVCRGADILIAAVGRPEMIRGSWIKEGAIVIDVGINRVPARDPAAAAAGKTRVVGDVAFEEAKGIAGAITPVPGGVGPMTIACLLLNTLTAACR 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_GEOSL (Bifunctional protein folD 2 OS=Geobacter sulfurreducens GN=folD2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 65/128 (50.78%), Postives = 75/128 (58.59%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK  VVVGRSNIVG PV+L+ L+ +ATVTI HS T D    VR AD+VIAA G   MIKG WIK GA VIDVG N V +       +LVGDV+F  A +                  MLL NTL+ AK
Sbjct:  157 GKEVVVVGRSNIVGKPVALMCLQRNATVTICHSKTRDLPGRVRAADVVIAAVGVPEMIKGDWIKEGAVVIDVGVNRVGEK------KLVGDVEFAAAAERASAITPVPGGVGPMTITMLLHNTLEAAK 278          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CHLPD3.935e-2447.10Bifunctional protein folD OS=Chlorobium phaeobacte... [more]
FOLD_AZOC53.935e-2448.84Bifunctional protein folD OS=Azorhizobium caulinod... [more]
FOLD_SPHAL6.712e-2448.06Bifunctional protein folD OS=Sphingopyxis alaskens... [more]
FOLD2_GEOMG8.766e-2450.76Bifunctional protein folD 2 OS=Geobacter metallire... [more]
FOLD3_PSEMY1.145e-2344.53Bifunctional protein folD 3 OS=Pseudomonas mendoci... [more]
FOLD_DICNV1.495e-2348.48Bifunctional protein folD OS=Dichelobacter nodosus... [more]
FOLD_ANADE1.953e-2348.09Bifunctional protein folD OS=Anaeromyxobacter deha... [more]
FOLD3_SPHWW1.953e-2348.84Bifunctional protein folD 3 OS=Sphingomonas wittic... [more]
FOLD_RHOCS3.331e-2350.00Bifunctional protein folD OS=Rhodospirillum centen... [more]
FOLD2_GEOSL3.331e-2350.78Bifunctional protein folD 2 OS=Geobacter sulfurred... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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