CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1505 contig Csv1_Contig1505:528..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RICRO (Bifunctional protein folD OS=Rickettsia rickettsii (strain Iowa) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK  V++GRSNIVG P+S LLLK + +VTI HS T +  SI  +ADIV+AA G  + +   +  P + VIDVG N +      S  +++GDVDF                        LL+NT+   K
Sbjct:  159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLRSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRI------SSNKIIGDVDFENVQSKVQYITPVPGGIGPMTIAFLLKNTVKAFK 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RICPU (Bifunctional protein folD OS=Rickettsia peacockii (strain Rustic) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK  V++GRSNIVG P+S LLLK + +VTI HS T +  SI  +ADIV+AA G  + +   +  P + VIDVG N +      S  +++GDVDF                        LL+NT+   K
Sbjct:  159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLRSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRI------SSNKIIGDVDFENVQSKVQYITPIPGGIGPMTIAFLLKNTVKAFK 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RICCN (Bifunctional protein folD OS=Rickettsia conorii GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK  V++GRSNIVG P+S LLLK + +VTI HS T +  SI  +ADIV+AA G  + +   +  P + VIDVG N +      S  +++GDVDF                        LL+NT+   K
Sbjct:  159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLRSITSKADIVVAAIGSPLKLTAEYFNPKSIVIDVGINRI------SSNKIIGDVDFENVQSKVQYITPVPGGIGPMTIAFLLKNTVKAFK 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RICAE (Bifunctional protein folD OS=Rickettsia africae (strain ESF-5) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK  V++GRSNIVG P+S LLLK + +VTI HS T +  SI  +ADIV+AA G  + +   +  P + VIDVG N +      S  +++GDVDF                        LL+NT+   K
Sbjct:  159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLRSITSKADIVVAAIGSPLKLTAEYFNPKSIVIDVGINRI------SSNKIIGDVDFENVQSKVQYITPVPGGIGPMTIAFLLKNTVKAFK 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_NITMU (Bifunctional protein folD OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = -2
Query:  256 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 540
            +G+ AV+VGRSNIVG P++L+LL+  ATVTI  S T +       ADI+I AAG+  +I    +KPGA VIDVG N + D       +L GDVDF
Sbjct:  157 EGQHAVIVGRSNIVGKPMALMLLQKGATVTICTSRTRNLAEHTSRADILIVAAGKPRLITAMMVKPGATVIDVGINRLSDG------KLAGDVDF 245          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_DEHSC (Bifunctional protein folD OS=Dehalococcoides sp. (strain CBDB1) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 55/138 (39.86%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  139 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 540
            +G   V+VGRSN+VG P++ +LL+    A+ATVTI HS T +   I R+ADI++AA G+   I    ++ GA VIDVGT  +   T +    L GDVDF E  +                  ML+ NTL  AKR + L
Sbjct:  158 EGTHVVIVGRSNLVGKPLANILLQKAPGANATVTICHSGTKNLPEITRQADILVAAMGKPKFITADMVREGAVVIDVGTTCI-GYTPEGKRILSGDVDFEEVKEKAFAITPVPKGVGPMTIIMLMLNTLTAAKRAVGL 294          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CLOD6 (Bifunctional protein folD OS=Clostridium difficile (strain 630) GN=folD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -2
Query:  259 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVD 540
            KG +  V+GRS +VG PVS+LLL   ATVTI HS T +   +  EAD++IAA G+A M+  S++K GA VIDVG N  ++        L GDVD
Sbjct:  163 KGSKVTVLGRSMVVGKPVSMLLLSEHATVTICHSKTKNLSGVAAEADVLIAAIGRAKMVDESFVKDGAVVIDVGINVDEEG------NLCGDVD 250          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_ACIAD (Bifunctional protein folD 2 OS=Acinetobacter sp. (strain ADP1) GN=folD2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -2
Query:  304 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVD 537
            GK AVVVGRS I+G P++ +LL+A+ATVTI HS T +    V++ADI++ A G+A +I+  WIKPGA V+D G +  D
Sbjct:  158 GKHAVVVGRSAILGKPMAAMLLEANATVTICHSRTQNLAEFVKQADIIVGAVGKAELIQKDWIKPGAVVVDAGFHPRD 235          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_YERE8 (Bifunctional protein folD OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=folD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            G  AVVVG SNIVG P+SL LL A  T T+ H  T +    V  AD+++ A G+   I G WIKPGA VIDVG N ++        ++VGDV+F  A +                   L++NTL   +
Sbjct:  159 GLNAVVVGASNIVGRPMSLELLLAGCTTTVTHRFTKNLRQHVENADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLESG------KVVGDVEFDVAVERAGWITPVPGGVGPMTVATLIQNTLQACE 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_STACT (Bifunctional protein folD OS=Staphylococcus carnosus (strain TM300) GN=folD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  250 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHE 537
            GK AVV+GRS+IVG PVS LL++ +ATVTI+HSH+ D    ++EAD++++A G+  ++    +K GA VIDVG N  D++ K     L GDV++ +
Sbjct:  158 GKDAVVIGRSHIVGQPVSKLLIQQNATVTILHSHSKDMSKYLKEADVIVSAVGKPGLVTKEDVKEGAVVIDVG-NTPDENGK-----LKGDVEYED 247          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_RICRO1.770e-1638.28Bifunctional protein folD OS=Rickettsia rickettsii... [more]
FOLD_RICPU1.770e-1638.28Bifunctional protein folD OS=Rickettsia peacockii ... [more]
FOLD_RICCN1.770e-1638.28Bifunctional protein folD OS=Rickettsia conorii GN... [more]
FOLD_RICAE1.770e-1638.28Bifunctional protein folD OS=Rickettsia africae (s... [more]
FOLD_NITMU1.770e-1649.47Bifunctional protein folD OS=Nitrosospira multifor... [more]
FOLD_DEHSC1.770e-1639.86Bifunctional protein folD OS=Dehalococcoides sp. (... [more]
FOLD_CLOD61.770e-1648.94Bifunctional protein folD OS=Clostridium difficile... [more]
FOLD2_ACIAD1.770e-1652.56Bifunctional protein folD 2 OS=Acinetobacter sp. (... [more]
FOLD_YERE82.312e-1639.06Bifunctional protein folD OS=Yersinia enterocoliti... [more]
FOLD_STACT2.312e-1646.88Bifunctional protein folD OS=Staphylococcus carnos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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