CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BACV8 (Bifunctional protein folD OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=folD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = -2
Query:  145 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 540
            +GK+ VV+GRSNIVG P++ L+++     DATVT+ HS + D     +EADI+IAA GQ   +K   +K GA VIDVGT  V D+TKKSG++L GDV F E                      L++NTL   K+ I
Sbjct:  156 QGKKCVVLGRSNIVGKPMASLMMQKAYPGDATVTVCHSRSKDLVKECQEADIIIAALGQPNFVKAEMVKEGAVVIDVGTTRVPDATKKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKAI 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_PSEMY (Bifunctional protein folD 2 OS=Pseudomonas mendocina (strain ymp) GN=folD2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK AVV+GRSNIVG P++ LLLKA  +V++VHS + +   + R+ADIV+AA G+  ++   W+KPGA VIDVG N +D+  +    RLVGDVDF  A                     L++NTL  A+
Sbjct:  162 GKHAVVIGRSNIVGKPMAALLLKAHCSVSVVHSKSANLRELCRQADIVVAAVGKPRLVDADWLKPGAVVIDVGINRIDEGGRS---RLVGDVDFDSALTRAAAITPVPGGVGPMTIAFLMKNTLVAAR 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD1_ROSDO (Bifunctional protein folD 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=folD1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = -2
Query:  256 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDF 537
            G  AVVVGRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+ G WIKPGA VIDVG N +D   K  G  RLVGDVDF
Sbjct:  159 GMDAVVVGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLADVVRRADIVVAAVGRPEMVPGDWIKPGATVIDVGINRLDAPEKGEGKTRLVGDVDF 253          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PORGI (Bifunctional protein folD OS=Porphyromonas gingivalis GN=folD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 60/133 (45.11%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  154 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 540
            +GK  VV+GRSNIVG PVS LLL+     D T+TI HS T + + +   ADI+IAA GQ   +    +KPGA V+DVGT  V DST+KSG+RL GDV F E                      L+ NTL  +K
Sbjct:  160 RGKHCVVLGRSNIVGKPVSQLLLQKGEPGDCTITICHSRTPNIKEVCLTADIIIAALGQPEFLTADMVKPGAVVVDVGTTLVPDSTRKSGFRLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMSNTLLASK 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BACFR (Bifunctional protein folD OS=Bacteroides fragilis GN=folD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  145 GKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 537
            GK+ VV+GRSNIVG P++ L+++     DATVT+ HS + D     READI+IAA GQ   +K   +K GA VIDVGT  V D++KKSG++L GDV F E                      L++NTL   K+ I
Sbjct:  157 GKKCVVLGRSNIVGKPMAALMMQKAYPGDATVTVCHSRSKDLVKECREADIIIAALGQPNFVKAEMVKEGAVVIDVGTTRVPDASKKSGFKLTGDVKFDEVSPKCSFITPVPGGVGPMTIVSLMKNTLLAGKKAI 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BACFN (Bifunctional protein folD OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=folD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 59/135 (43.70%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  145 GKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 537
            GK+ VV+GRSNIVG P++ L+++     DATVT+ HS + D     READI+IAA GQ   +K   +K GA VIDVGT  V D++KKSG++L GDV F E                      L++NTL   K+ I
Sbjct:  157 GKKCVVLGRSNIVGKPMAALMMQKAYPGDATVTVCHSRSKDLVKECREADIIIAALGQPNFVKAEMVKEGAVVIDVGTTRVPDASKKSGFKLTGDVKFDEVSPKCSFITPVPGGVGPMTIVSLMKNTLLAGKKAI 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_MYXXD (Bifunctional protein folD 2 OS=Myxococcus xanthus (strain DK 1622) GN=folD2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GKRAVVVGRSNIVG P++L+LL+ +ATVTI HS  +D    V  ADI++ A G A ++KG+WIKPGA VIDVG N      +K   +LVGDV+F  A +                  ML+RNTLD A R
Sbjct:  159 GKRAVVVGRSNIVGKPMALMLLQKNATVTICHS-KSDLRREVEGADILVVAVGAAELVKGAWIKPGAVVIDVGMN------RKPDGKLVGDVEFAAAAERASFITPVPGGVGPMTIAMLMRNTLDAAVR 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_MOUSE (C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = -2
Query:  142 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 537
            G+ AVVVGRS IVG P+  LLL  +ATVT  HS T + +  V + DI++ A GQ  M+KG WIKPGA VID G N V D TK +G ++VGDV + EA +                  ML+++T++ A+R ++
Sbjct:  165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTANLDKEVNKGDILVVATGQPEMVKGEWIKPGAVVIDCGINYVPDDTKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAQRFLQ 296          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_NATTJ (Bifunctional protein folD OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=folD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = -2
Query:  145 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 537
            GK AVV+GRSNIVG P+SLLLL+ +ATV+I HS T D   + + AD++I A G+  ++ G  IKPGA VIDVG N VDD       +L+GDV+F  A +                  MLL NT++ A+R +
Sbjct:  158 GKHAVVLGRSNIVGKPISLLLLERNATVSICHSRTKDLTEMTKSADLLIVAVGRPEIVTGKMIKPGAVVIDVGVNKVDD-------KLIGDVEFESAKEVAGWITPVPGGVGPMTITMLLNNTIEAARRCL 281          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_HALOH (Bifunctional protein folD OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=folD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK+AVVVGRSNIVG PV+ LLL+  ATVT+ HSHT D     R+ADI++ AAG+  ++KG  +K GAAVIDVGTN VD         LVGDVDF  A +                  ML++NT+   K
Sbjct:  159 GKKAVVVGRSNIVGKPVAHLLLERHATVTVCHSHTADLGIETRQADILVVAAGRPKLVKGEMVKEGAAVIDVGTNRVDG-------HLVGDVDFEAARQRAGYITPVPGGVGPMTIAMLMKNTVKARK 279          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BACV87.420e-2343.38Bifunctional protein folD OS=Bacteroides vulgatus ... [more]
FOLD2_PSEMY7.420e-2343.75Bifunctional protein folD 2 OS=Pseudomonas mendoci... [more]
FOLD1_ROSDO7.420e-2361.05Bifunctional protein folD 1 OS=Roseobacter denitri... [more]
FOLD_PORGI9.691e-2345.11Bifunctional protein folD OS=Porphyromonas gingiva... [more]
FOLD_BACFR9.691e-2343.70Bifunctional protein folD OS=Bacteroides fragilis ... [more]
FOLD_BACFN9.691e-2343.70Bifunctional protein folD OS=Bacteroides fragilis ... [more]
FOLD2_MYXXD9.691e-2349.61Bifunctional protein folD 2 OS=Myxococcus xanthus ... [more]
C1TC_MOUSE9.691e-2343.94C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus ... [more]
FOLD_NATTJ1.266e-2245.04Bifunctional protein folD OS=Natranaerobius thermo... [more]
FOLD_HALOH1.266e-2248.44Bifunctional protein folD OS=Halothermothrix oreni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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