CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_GEOSF (Bifunctional protein folD OS=Geobacter sp. (strain FRC-32) GN=folD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 63/129 (48.84%), Postives = 76/129 (58.91%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            GK  VVVGRSNIVG PV+ + L+ +ATVT+ HS T D  + V  AD+VIAA GQ  MIKG+WIK GA VIDVG N V +       +LVGDV++  A                    MLL NTL+ AKR
Sbjct:  157 GKEVVVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRDLAAKVAMADVVIAAVGQPEMIKGAWIKKGAVVIDVGVNRVGEK------KLVGDVEYEAASARASAITPVPGGVGPMTITMLLYNTLESAKR 279          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CHLAD (Bifunctional protein folD OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=folD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.266e-22
Identity = 55/98 (56.12%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 540
            +GKRA VVGRS IVG P++LLLL+ADATVTI HS T+D  +++RE DI++AAAG+  +I    IKPGA +ID GTN + D +      +VGDVDF  A
Sbjct:  158 RGKRAAVVGRSAIVGRPMALLLLQADATVTICHSRTSDLGAVLRECDIIVAAAGRPQLITAEMIKPGATIIDFGTNVLADGS------MVGDVDFAAA 249          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SOLUE (Bifunctional protein folD OS=Solibacter usitatus (strain Ellin6076) GN=folD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  259 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTK----------------KSGYRLVGDVD 537
            G+RAVVVGRS+IVG PV++LLL   ATVTI HS T D +S+ READI++AA G+A MI G +IKPGA VIDVGTN V D  K                K G  L+GDVD
Sbjct:  157 GQRAVVVGRSDIVGKPVAMLLLHEHATVTICHSKTPDLKSLCREADILVAAIGRAAMITGEFIKPGATVIDVGTNHVADREKAARIYRNSPEKMANFDKRGNLLIGDVD 265          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PROA2 (Bifunctional protein folD OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=folD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +GK  VVVGRSNIVG P++ L+L+     + TVT+ HS T +   + R+ADI+IAA G+A  I    +KPGA VIDVG N ++D ++KSG+RL GDVDF    +                  MLL+NTL    R
Sbjct:  158 RGKHCVVVGRSNIVGKPMANLMLQKLRETNCTVTVCHSATQNMPELTRQADILIAAIGRANFITREMVKPGAVVIDVGINRIEDPSRKSGFRLAGDVDFDNVAEMASAITPVPGGVGPMTIAMLLKNTLQSFAR 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BARBK (Bifunctional protein folD OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=folD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 64/134 (47.76%), Postives = 77/134 (57.46%), Query Frame = -2
Query:  139 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 537
            G  AV+VGRSNIVG P++ LL  A+ATVT+ HS T D + I R ADI+IAA G+  MIK  W+K GA VIDVG N +    K  G  RLVGDVDF E                     ML+ NTL  A R ++L
Sbjct:  161 GLNAVIVGRSNIVGKPMAALLTAANATVTLAHSRTRDLDEICRRADILIAAVGRPQMIKKHWVKKGAIVIDVGINRIAAPEKGPGKTRLVGDVDFEEVKGKTLAITPVPGGVGPMTIAMLMVNTLKAAARSLKL 294          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: C1TC_HUMAN (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.653e-22
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  142 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIE 537
            G+ AVVVGRS IVG P+  LLL  +ATVT  HS T   +  V + DI++ A GQ  M+KG WIKPGA VID G N V D  K +G ++VGDV + EA +                  ML+++T++ AKR +E
Sbjct:  165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE 296          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_RHORT (Bifunctional protein folD OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=folD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            GK A+V+GRSNIVG P++ LLL A+ TVT+ HS + D   + R  DIV+AA G+  M+KG W+KPGA VIDVG N +  +      +LVGDVD+  A                     LL NTL+  K
Sbjct:  163 GKTALVIGRSNIVGKPMAQLLLSANCTVTLAHSRSRDLPDLCRRMDIVVAAVGRPEMVKGDWLKPGAVVIDVGMNRLPAAPGAEKGKLVGDVDYASAAAVAGAITPVPGGVGPMTIACLLANTLEACK 290          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PELPB (Bifunctional protein folD OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=folD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 65/138 (47.10%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  139 KGKRAVVVGRSNIVGLPVS-LLLLKADAT---VTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 540
            +GK  VVVGRSNIVG P++ L+L K DAT   VTI HS T +      +ADI+IAA G+A  I    +KPGA VIDVG N ++D + KSGYRLVGDVDF                       MLL+NTL   +R+  L
Sbjct:  158 RGKHCVVVGRSNIVGKPMANLMLQKLDATNCTVTICHSATKNIPFYTLQADILIAAIGKAGFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDFEAVSTVASAMTPVPGGVGPMTIAMLLKNTLQSFQRINNL 295          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_NOVAD (Bifunctional protein folD OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=folD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P++ LL+    TVT+ HS T +   +VR ADIV+AA G+  M+KG WIKPGA VIDVG N V    ++   RLVGDVD+  A +                  +LLRN L  A R
Sbjct:  159 GLDAVVIGRSNIVGKPMAQLLIAESCTVTVAHSRTKNLPEVVRRADIVVAAVGRPEMVKGDWIKPGATVIDVGINRV-PGKEEGKTRLVGDVDYASAAEVASAITPVPGGVGPMTIAVLLRNALVAAYR 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_PROVI (Bifunctional protein folD OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=folD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 64/137 (46.72%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  139 GKRAVVVGRSNIVGLPVSLLLL----KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 537
            GK  VVVGRSNIVG P++ L+L    +++ TVTI HS T D  S  R+ADI+IAA G+A  I    +K GA VIDVG N +DD T KSG RLVGDVD+                       MLL+NTL   +R   L
Sbjct:  159 GKHCVVVGRSNIVGKPMANLMLQKLKRSNCTVTICHSATQDIASYTRQADILIAAIGRAKFITPDMVKEGAVVIDVGINRIDDPTTKSGTRLVGDVDYEGVSALASAMTPVPGGVGPMTIAMLLKNTLHSFERTHNL 295          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_GEOSF1.266e-2248.84Bifunctional protein folD OS=Geobacter sp. (strain... [more]
FOLD_CHLAD1.266e-2256.12Bifunctional protein folD OS=Chloroflexus aggregan... [more]
FOLD_SOLUE1.653e-2255.96Bifunctional protein folD OS=Solibacter usitatus (... [more]
FOLD_PROA21.653e-2244.03Bifunctional protein folD OS=Prosthecochloris aest... [more]
FOLD_BARBK1.653e-2247.76Bifunctional protein folD OS=Bartonella bacillifor... [more]
C1TC_HUMAN1.653e-2244.70C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo... [more]
FOLD_RHORT2.159e-2243.75Bifunctional protein folD OS=Rhodospirillum rubrum... [more]
FOLD_PELPB2.159e-2247.10Bifunctional protein folD OS=Pelodictyon phaeoclat... [more]
FOLD_NOVAD2.159e-2246.51Bifunctional protein folD OS=Novosphingobium aroma... [more]
FOLD_PROVI2.820e-2246.72Bifunctional protein folD OS=Prosthecochloris vibr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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