CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1505 contig Csv1_Contig1505:528..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_ANAVT (Bifunctional protein folD OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=folD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = -2
Query:  256 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 540
            +GK+AVVVGRS +VG P++L+LL+ADATVTI HS + D +SI + ADI++AAAG   +I    +KPGA V+DVG N V D+  KS  RLVGD++F
Sbjct:  161 RGKQAVVVGRSILVGKPMALMLLEADATVTIAHSRSQDLKSITQNADILVAAAGLPGLITADMVKPGAVVVDVGINRVTDANGKS--RLVGDINF 253          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_ANASP (Bifunctional protein folD OS=Anabaena sp. (strain PCC 7120) GN=folD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.810e-22
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = -2
Query:  256 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 540
            +GK+AVVVGRS +VG P++L+LL+ADATVTI HS + D +SI + ADI+IAAAG   +I    +KPGA V+DVG N V D+  KS  RLVGD++F
Sbjct:  161 RGKQAVVVGRSILVGKPMALMLLEADATVTIAHSRSQDLKSITQNADILIAAAGLPGLITADMVKPGAVVVDVGINRVSDAHGKS--RLVGDINF 253          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_LISMF (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +  +++      +L GDVDF +  +                  MLL NTL  AKR+
Sbjct:  156 EGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAVVIDVGMDRDENN------KLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRI 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_LISIN (Bifunctional protein folD OS=Listeria innocua GN=folD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T D   + +EADI++ A G A  +K  +IKPGA VIDVG +  +++      +L GDVDF +  +                  MLL NTL  AKR+
Sbjct:  156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKEYIKPGAIVIDVGMDRDENN------KLCGDVDFDDVKEQAGFITPVPGGVGPMTITMLLANTLKAAKRI 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_LARHH (Bifunctional protein folD OS=Laribacter hongkongensis (strain HLHK9) GN=folD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 59/128 (46.09%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  157 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGA 540
            +GK AVV+G+SNIVG P++L LL   ATVTI HS T D    V+ ADI++AA G    +KG W+KPGA VIDVG N ++D       +L GDVDF  A +                   LL NTLD A
Sbjct:  158 EGKHAVVIGQSNIVGRPMALELLMERATVTICHSRTRDLPEEVKRADIIVAAVGIPRFVKGDWVKPGAVVIDVGINRLEDG------KLCGDVDFDAAKEHASWITPVPGGVGLMTVATLLANTLDAA 279          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_JANSC (Bifunctional protein folD OS=Jannaschia sp. (strain CCS1) GN=folD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = -2
Query:  247 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 537
            GK AVV+GRSN+ G P++ LLL  + TVTI HS T D   + R ADI++AA G+A M++G WIKPGA VIDVG + V    K    +L+GDV F EA
Sbjct:  168 GKDAVVIGRSNLFGKPMAQLLLGDNCTVTIAHSRTKDLADVCRRADILVAAVGRAEMVRGDWIKPGATVIDVGISRVPHPDKPGKTKLIGDVHFAEA 264          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_GLUOX (Bifunctional protein folD OS=Gluconobacter oxydans GN=folD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  154 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 537
            G  AVV+G SN+VG P++ LLLK + TVT+ H HT + + + READI++ A G++ +++G WIKPGA VIDVG   V     K+  RLVGDV F EA                     LL NTL  A+
Sbjct:  169 GMHAVVIGASNLVGKPMAQLLLKENCTVTVAHIHTRNTKELAREADILVVATGKSELVRGDWIKPGATVIDVGITRVPAENGKT--RLVGDVAFDEAFPIAGHITPVPGGVGPMTIACLLHNTLQAAR 294          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_ANAMM (Bifunctional protein folD OS=Anaplasma marginale (strain St. Maries) GN=folD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = -2
Query:  256 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 537
            G  AVVVGRSNIVG PV+LLLL  + TVT++HS + + E     ADI++AA G+A  I+ SWIKPGA V+DVG N V++S KK   R VGDV+F
Sbjct:  159 GSNAVVVGRSNIVGKPVALLLLYENCTVTVLHSASRNLEEHCLRADIIVAAVGKARFIRASWIKPGAIVVDVGINLVEESGKK---RFVGDVEF 249          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SALRD (Bifunctional protein folD OS=Salinibacter ruber (strain DSM 13855) GN=folD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  154 AVVVGRSNIVGLPVSLLLLK--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAK 528
            AV+VGRSNIVG P++ LLL+  A+ATVT+ HS T D  +  R AD+++AAAGQA  I    +K  A VIDVG N VDD +   GYRLVGDVDF                       MLL+NTL  A+
Sbjct:  165 AVIVGRSNIVGKPLANLLLRRTANATVTVCHSRTKDLAAHTRRADLLVAAAGQAAFIDADMVKEDAVVIDVGINRVDDPSTDRGYRLVGDVDFEGVRPKARRITPVPGGVGLMTRAMLLKNTLKAAR 291          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CYAP4 (Bifunctional protein folD OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=folD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  256 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDF 540
            +GK AVV+GRS +VG P++++LL+ADATVTI HS +TD   I R ADI+IAA G+  ++    +K GA V+DVG N V ++T KS  RLVGDVDF
Sbjct:  161 RGKEAVVIGRSILVGKPLAMMLLEADATVTIAHSRSTDLAEIARRADILIAAVGKPGLVSAGMVKAGAVVVDVGINRVVEATGKS--RLVGDVDF 253          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_ANAVT4.810e-2256.84Bifunctional protein folD OS=Anabaena variabilis (... [more]
FOLD_ANASP4.810e-2257.89Bifunctional protein folD OS=Anabaena sp. (strain ... [more]
FOLD_LISMF6.282e-2245.80Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISIN6.282e-2245.80Bifunctional protein folD OS=Listeria innocua GN=f... [more]
FOLD_LARHH6.282e-2246.09Bifunctional protein folD OS=Laribacter hongkongen... [more]
FOLD_JANSC6.282e-2253.61Bifunctional protein folD OS=Jannaschia sp. (strai... [more]
FOLD_GLUOX6.282e-2243.75Bifunctional protein folD OS=Gluconobacter oxydans... [more]
FOLD_ANAMM8.204e-2257.45Bifunctional protein folD OS=Anaplasma marginale (... [more]
FOLD_SALRD1.072e-2148.03Bifunctional protein folD OS=Salinibacter ruber (s... [more]
FOLD_CYAP41.072e-2155.79Bifunctional protein folD OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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