CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CHLT3 (Bifunctional protein folD OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=folD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  166 KGKRAVVVGRSNIVGLPVSLLLLKA----DATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTL 540
            KGK  V+VGRSNIVG P++ L+++     + TVT+ HS T D  +  ++ADI+IAA G+A  I G  IK GA VIDVG N ++ +  KSGYRLVGDVDF  A +                  MLL NT+
Sbjct:  158 KGKHCVIVGRSNIVGKPMANLMVQKLAYMNCTVTVCHSATPDIATYTKQADILIAAIGKARFITGDMIKAGAVVIDVGINRIEATNTKSGYRLVGDVDFEAASQKASAITPVPGGVGPMTISMLLANTM 286          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD1_SILPO (Bifunctional protein folD 1/3 OS=Silicibacter pomeroyi GN=folD1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 60/133 (45.11%), Postives = 72/133 (54.14%), Query Frame = -2
Query:  139 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 537
            G  AVV+GRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+ G WIKPGA VIDVG N ++   K    RLVGDV +    +                   LL NTL    R  +L
Sbjct:  159 GMDAVVIGRSNIVGKPMAQLLLGDSCTVTIAHSRTKDLADVVRRADIVVAAVGRPEMVPGDWIKPGATVIDVGINRIERDGKT---RLVGDVHYDSCAQVAGAITPVPGGVGPMTIACLLANTLTACTRANKL 288          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SYNP6 (Bifunctional protein folD OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=folD PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = -2
Query:  247 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 537
            GK+AVV+GRS +VG P++++LL+A+ATVTI HS T +   + R+ADIV+AA G+  ++   WIKPGA V+DVG N ++D       RLVGDVD+  A
Sbjct:  159 GKKAVVIGRSILVGKPLAMMLLEANATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKPGAVVVDVGINRLEDG------RLVGDVDYEAA 249          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_SYNE7 (Bifunctional protein folD OS=Synechococcus elongatus (strain PCC 7942) GN=folD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = -2
Query:  247 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 537
            GK+AVV+GRS +VG P++++LL+A+ATVTI HS T +   + R+ADIV+AA G+  ++   WIKPGA V+DVG N ++D       RLVGDVD+  A
Sbjct:  159 GKKAVVIGRSILVGKPLAMMLLEANATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKPGAVVVDVGINRLEDG------RLVGDVDYEAA 249          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_METPP (Bifunctional protein folD OS=Methylibium petroleiphilum (strain PM1) GN=folD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  145 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVI 540
            KGK AVV+GRSNIVG P+++LLL+A+ATVT+ HS T D     R+ADIV+AA G+  ++    +KPGA VIDVG N  D        +L GDVD+    K                  MLL NTL+ A+R++
Sbjct:  157 KGKHAVVIGRSNIVGKPMAMLLLQANATVTVCHSATPDLALHTRQADIVVAAVGKRKVLTADMVKPGAVVIDVGMNRDDHG------KLCGDVDYAGVAKVAGWITPVPGGVGPMTITMLLMNTLESAERLV 282          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_LISW6 (Bifunctional protein folD OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            +GKRAVV+GRSNIVG PV+ LLL  +ATVTI HS T +   + +EADI++ A G A  +K  +IKPGA VIDVG +  +++      +L GDVDF +  +                  MLL NTL  AKR+
Sbjct:  156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKNLPEVAKEADILVVATGLAKFVKKEYIKPGAIVIDVGMDRDENN------KLCGDVDFDDVIEEAGFITPVPGGVGPMTITMLLANTLKAAKRI 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_CHLCH (Bifunctional protein folD OS=Chlorobium chlorochromatii (strain CaD3) GN=folD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  148 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 540
            KGK  VVVGRSNIVG P++ L+L+    ++ TVTI HS T +     ++ADI+IAA G+A  I    +K GA VIDVG N VDD++ K+GYRLVGDV++                       MLL+NT+   +RV
Sbjct:  158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATPNITEFTKQADILIAAIGKANFITADMVKAGAVVIDVGINRVDDASAKNGYRLVGDVEYAGVSALASAITPVPGGVGPMTIAMLLKNTVQSFQRV 292          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_ROSDO (Bifunctional protein folD 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=folD2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 59/130 (45.38%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P++ LLL    TVTI HS T D   +VR ADIV+AA G+  M+ G WIKPGA VIDVG N +D   K  G  RLVGD  +    +                   LL NT+    R
Sbjct:  159 GMNAVVIGRSNIVGKPMAQLLLNDSCTVTIAHSRTKDLPDVVRGADIVVAAVGRPEMVPGDWIKPGATVIDVGINRIDAPEKGEGKTRLVGDCHYDSCAETAGAITPVPGGVGPMTIACLLANTVTSCCR 288          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BARHE (Bifunctional protein folD OS=Bartonella henselae GN=folD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 62/134 (46.27%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  139 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRVIEL 537
            G  AVVVGRSNIVG P++ LL  A+ATVTI HS T D + + R ADI++ A G+  MIK  W+K GA +IDVG N +    K  G  RLVGDVDF E  +                  ML+ NTL  A R+  L
Sbjct:  161 GLDAVVVGRSNIVGKPMAALLTAANATVTIAHSRTRDLDDVCRSADILVTAIGRPQMIKKDWVKNGAIIIDVGINRIAAPEKGVGKTRLVGDVDFEEIKEKAAAITPVPGGVGPMTIAMLMVNTLKAAARLHNL 294          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_RHIME (Bifunctional protein folD 2 OS=Rhizobium meliloti GN=folD2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  148 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSG-YRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 537
            G  AVV+GRSN+ G P+S LLL A+ATVT  HS T D  ++ R ADI++AA G+  M+K  W+KPGA V+DVG N V    +  G  +LVGDV F E  K                  ML+ NT+  A R+
Sbjct:  161 GLNAVVIGRSNLFGKPMSALLLAANATVTTAHSRTKDLAAVCRNADILVAAVGRPEMVKADWVKPGAMVVDVGINRVPAPERGEGRTKLVGDVAFDECAKVAGVITPVPGGVGPMTIAMLMANTIIAACRM 291          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_CHLT31.072e-2145.74Bifunctional protein folD OS=Chloroherpeton thalas... [more]
FOLD1_SILPO1.072e-2145.11Bifunctional protein folD 1/3 OS=Silicibacter pome... [more]
FOLD_SYNP61.399e-2151.55Bifunctional protein folD OS=Synechococcus sp. (st... [more]
FOLD_SYNE71.399e-2151.55Bifunctional protein folD OS=Synechococcus elongat... [more]
FOLD_METPP1.399e-2144.70Bifunctional protein folD OS=Methylibium petroleip... [more]
FOLD_LISW61.399e-2145.04Bifunctional protein folD OS=Listeria welshimeri s... [more]
FOLD_CHLCH1.399e-2144.44Bifunctional protein folD OS=Chlorobium chlorochro... [more]
FOLD2_ROSDO1.399e-2145.38Bifunctional protein folD 2 OS=Roseobacter denitri... [more]
FOLD_BARHE1.828e-2146.27Bifunctional protein folD OS=Bartonella henselae G... [more]
FOLD2_RHIME1.828e-2144.27Bifunctional protein folD 2 OS=Rhizobium meliloti ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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