CN182082

Overview
NameCN182082
Unique NameCN182082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.083e-57
Identity = 105/117 (89.74%), Postives = 116/117 (99.15%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDPTG
Sbjct:  320 DPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.846e-57
Identity = 107/117 (91.45%), Postives = 115/117 (98.29%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK+VEKKDPTG
Sbjct:  320 DPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTG 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.482e-56
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+PTG
Sbjct:  320 DPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.482e-56
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+PTG
Sbjct:  320 DPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 5.954e-48
Identity = 89/117 (76.07%), Postives = 105/117 (89.74%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK+V KKD +G
Sbjct:  320 DPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47
Identity = 88/117 (75.21%), Postives = 105/117 (89.74%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  330 DPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.732e-47
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  330 DPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.732e-47
Identity = 87/117 (74.36%), Postives = 105/117 (89.74%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  330 DPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.466e-46
Identity = 85/117 (72.65%), Postives = 105/117 (89.74%), Query Frame = -2
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIKSVEK +  G
Sbjct:  332 DPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.466e-46
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = -2
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  332 DPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
The following BLAST results are available for this feature:
BLAST of CN182082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_SOLLC1.083e-5789.74Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A1_DAUCA1.846e-5791.45Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU3.482e-5689.74Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU3.482e-5689.74Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_TRYBB5.954e-4876.07Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL1.326e-4775.21Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_RHIRA1.732e-4774.36Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA1.732e-4774.36Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_PIRIN1.466e-4672.65Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A0_XENLA1.466e-4679.65Elongation factor 1-alpha, somatic form OS=Xenopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182082 ID=CN182082; Name=CN182082; organism=Citrus sinensis; type=EST; length=665bp
GCTCCAATGTATTAAAACCACCAACTTTGACATCCAGCAGCTGGTCTATA
AACTTCACAACTCAATTTAGTGCTATTAACCAAATTCAGAATATAAAAAT
CCGAACCCCCACGACAGCCAGTTAAGCAGAAAGATAACATCCCAATTGCT
CAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTTGCAGAAACATTGATG
CAAAACAAAAACAGAAAAGAAAATAAAAAAGACAGAAAATAAACCCTAAC
TATTGTAGACAGACCCATAAAAATTTCTCATTTCTTCTTGGCTGCGGACT
TGGTGACCTTGGCACCTGTGGGATCCTTCTTCTCAACACTCTTGATAACA
CCCACAGCAACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGG
TGGGTAGTCGGAGAATGTCTCAACAACCATGGGCTTGGTGGGAATCATCT
TAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGC
TCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGAC
GGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAA
TCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAATTGGCAGCT
TCCCTGGCCGGATCA
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