CN182082

Overview
NameCN182082
Unique NameCN182082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = -2
Query:  323 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 664
            +P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  314 NPPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 47/113 (41.59%), Postives = 78/113 (69.03%), Query Frame = -2
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            +P + A  F +Q+I+++HP  +  GY PV+ CHT+ +A   SE V+KI+  +G   E+ PKFLK GD+ ++K+ P +P  +ETF ++P +GRFA+RDM  T+A G++K + ++
Sbjct:  321 NPPKVAKEFLAQIIVIHHPTALAPGYTPVMHCHTAQVAAIMSEFVSKINPATGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEITEE 433          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  347 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 664
            D    A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  300 DAPAVAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = -2
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            +P + A  F  Q++++ HP  I  GY PV   HTS IA +  EL  K+D +SG+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  310 NPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  332 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 664
            +P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  322 NPPTVADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = -2
Query:  326 FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 640
            FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  320 FTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 51/106 (48.11%), Postives = 77/106 (72.64%), Query Frame = -2
Query:  332 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 649
            A    ++V+I+ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I  V+
Sbjct:  332 AEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQIIEVK 437          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 48/109 (44.04%), Postives = 76/109 (69.72%), Query Frame = -2
Query:  329 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 655
            R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  318 RTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = -2
Query:  329 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 655
            R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  318 RTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 47/109 (43.12%), Postives = 76/109 (69.72%), Query Frame = -2
Query:  329 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 655
            R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S+++
Sbjct:  320 RTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 428          
The following BLAST results are available for this feature:
BLAST of CN182082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_METM51.208e-2446.49Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_CENSY1.208e-2441.59Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METS32.691e-2449.06Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METBF2.691e-2446.90Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_IGNH44.590e-2445.95Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_THEVO5.995e-2447.62Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_PYRIL5.995e-2448.11Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRHO5.995e-2444.04Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB5.995e-2444.95Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_PYRWO1.744e-2343.12Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182082 ID=CN182082; Name=CN182082; organism=Citrus sinensis; type=EST; length=665bp
GCTCCAATGTATTAAAACCACCAACTTTGACATCCAGCAGCTGGTCTATA
AACTTCACAACTCAATTTAGTGCTATTAACCAAATTCAGAATATAAAAAT
CCGAACCCCCACGACAGCCAGTTAAGCAGAAAGATAACATCCCAATTGCT
CAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTTGCAGAAACATTGATG
CAAAACAAAAACAGAAAAGAAAATAAAAAAGACAGAAAATAAACCCTAAC
TATTGTAGACAGACCCATAAAAATTTCTCATTTCTTCTTGGCTGCGGACT
TGGTGACCTTGGCACCTGTGGGATCCTTCTTCTCAACACTCTTGATAACA
CCCACAGCAACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGG
TGGGTAGTCGGAGAATGTCTCAACAACCATGGGCTTGGTGGGAATCATCT
TAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGC
TCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGAC
GGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAA
TCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAATTGGCAGCT
TCCCTGGCCGGATCA
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