CN182082

Overview
NameCN182082
Unique NameCN182082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 47/109 (43.12%), Postives = 76/109 (69.72%), Query Frame = -2
Query:  329 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 655
            R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S+++
Sbjct:  318 RTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 426          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = -2
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            +P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  310 NPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIALNKKLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  323 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 649
            A  FT+Q++++ HP  +  GY PV   HT+ +A  F EL  K++  +G+  E+ P FLK GDA +VK++PTKPMV+E   + P LGRFA+RDM  TVA G+   V+ K+
Sbjct:  319 AEEFTAQIVVLQHPSVMTVGYTPVFHAHTAQVACTFMELQKKLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGMCIDVKAKN 427          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = -2
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            +P + A  F  Q++++ HP  I  GY PV   HTS IA +   L  K+D ++G+  E+ P F+K GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  310 NPPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLISLDKKLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = -2
Query:  326 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 649
            A  F +QV+++ HP  I  GY PV  CHT+ +A   ++++  +D ++G   E+ P F+K GDA +V + PT+P+V+E   + P LGRFA+RDM QTVA GV+  +  K
Sbjct:  319 AVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  329 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 664
            +P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G    +EK
Sbjct:  312 NPPTVVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  347 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 664
            +P   A  F +Q++++ HPG +  GY PV   HT+ +A  F  L  K+D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  300 NPPSVAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVACTFLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 46/111 (41.44%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  332 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 664
            +P   A    +++ ++ HP  IG GY PV+  HT+ +  +  EL++++D  +G+ +E++P+F+K GD  MV++ P KP+VVE FSD P LGRF++RDM +TVA G I  ++
Sbjct:  326 NPPTVAEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEIK 436          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.290e-22
Identity = 46/110 (41.82%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  332 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 661
            P   A  F +++ ++ HP  I  GY PV+  HT+ ++ +  E+  K+D ++G+ +E+ P+FLK GDA +V+  P KP+VVE FS+ P LGRFA+RDM +TV +G++  V+
Sbjct:  319 PPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.297e-22
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  326 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 661
            P   A  FT Q++++ HP  I  GY PV  CHT+  A     +  K+D +SG+  E+ P ++K GDA +V + PT+PM +E  S+ P LGRFA+RDM  T+A G+  SV +K
Sbjct:  310 PPSVADEFTGQIVVLQHPSAITVGYTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
The following BLAST results are available for this feature:
BLAST of CN182082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_PYRFU1.744e-2343.12Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METMA2.975e-2345.13Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_META32.975e-2345.87Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_METAC3.886e-2344.25Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_UNCMA8.657e-2342.59Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_PICTO1.477e-2241.07Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_METST1.477e-2245.28Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_CALMQ2.519e-2241.44Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_AERPE3.290e-2241.82Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_METBU4.297e-2242.86Elongation factor 1-alpha OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182082 ID=CN182082; Name=CN182082; organism=Citrus sinensis; type=EST; length=665bp
GCTCCAATGTATTAAAACCACCAACTTTGACATCCAGCAGCTGGTCTATA
AACTTCACAACTCAATTTAGTGCTATTAACCAAATTCAGAATATAAAAAT
CCGAACCCCCACGACAGCCAGTTAAGCAGAAAGATAACATCCCAATTGCT
CAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTTGCAGAAACATTGATG
CAAAACAAAAACAGAAAAGAAAATAAAAAAGACAGAAAATAAACCCTAAC
TATTGTAGACAGACCCATAAAAATTTCTCATTTCTTCTTGGCTGCGGACT
TGGTGACCTTGGCACCTGTGGGATCCTTCTTCTCAACACTCTTGATAACA
CCCACAGCAACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGG
TGGGTAGTCGGAGAATGTCTCAACAACCATGGGCTTGGTGGGAATCATCT
TAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGC
TCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGAC
GGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAA
TCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAATTGGCAGCT
TCCCTGGCCGGATCA
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