CN182082

Overview
NameCN182082
Unique NameCN182082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1057..1722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.621e-45
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  332 DPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = -2 
Query:  326 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 664
            DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  332 DPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 84/117 (71.79%), Postives = 102/117 (87.18%), Query Frame = -2 
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  332 DPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.612e-45
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = -2 
Query:  314 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 664
            DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  329 DPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445
[Close]
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 4.717e-45
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = -2 
Query:  323 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 664
            DP +EAA+F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  L  KIDRR+GK LE+ PKF+K+GDA +VKM+P+K M VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  329 DPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442
The following BLAST results are available for this feature:
BLAST of CN182082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A1_PANTR1.621e-4577.88Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE1.621e-4577.88Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN1.621e-4577.88Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_FELCA1.621e-4577.88Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR1.621e-4577.88Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN1.621e-4577.88Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_DANRE2.766e-4577.88Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A2_OSCTI2.766e-4571.79Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A_AURPU3.612e-4571.79Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_PUCGR4.717e-4574.56Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182082 ID=CN182082; Name=CN182082; organism=Citrus sinensis; type=EST; length=665bp
GCTCCAATGTATTAAAACCACCAACTTTGACATCCAGCAGCTGGTCTATA
AACTTCACAACTCAATTTAGTGCTATTAACCAAATTCAGAATATAAAAAT
CCGAACCCCCACGACAGCCAGTTAAGCAGAAAGATAACATCCCAATTGCT
CAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTTGCAGAAACATTGATG
CAAAACAAAAACAGAAAAGAAAATAAAAAAGACAGAAAATAAACCCTAAC
TATTGTAGACAGACCCATAAAAATTTCTCATTTCTTCTTGGCTGCGGACT
TGGTGACCTTGGCACCTGTGGGATCCTTCTTCTCAACACTCTTGATAACA
CCCACAGCAACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGG
TGGGTAGTCGGAGAATGTCTCAACAACCATGGGCTTGGTGGGAATCATCT
TAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGC
TCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGAC
GGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAA
TCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAATTGGCAGCT
TCCCTGGCCGGATCA
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