CN182082

Overview
NameCN182082
Unique NameCN182082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 59/96 (61.46%), Postives = 80/96 (83.33%), Query Frame = -2
Query:  377 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 664
            +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  318 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.167e-27
Identity = 55/111 (49.55%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  332 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 664
            +P   A  FT+++I++ HP  + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I  V+
Sbjct:  318 NPPTVADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CN182082 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  332 DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 664
            +P   A  FT++VI++ HP  +  GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI  V+
Sbjct:  318 NPPTVAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
The following BLAST results are available for this feature:
BLAST of CN182082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
EF1A_HELZE2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE2.056e-3261.46Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_SULSO1.167e-2749.55Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METS53.396e-2750.45Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182082 ID=CN182082; Name=CN182082; organism=Citrus sinensis; type=EST; length=665bp
GCTCCAATGTATTAAAACCACCAACTTTGACATCCAGCAGCTGGTCTATA
AACTTCACAACTCAATTTAGTGCTATTAACCAAATTCAGAATATAAAAAT
CCGAACCCCCACGACAGCCAGTTAAGCAGAAAGATAACATCCCAATTGCT
CAACAGCAAACTGGTGGAAGCAAATAGGGCTGTTTGCAGAAACATTGATG
CAAAACAAAAACAGAAAAGAAAATAAAAAAGACAGAAAATAAACCCTAAC
TATTGTAGACAGACCCATAAAAATTTCTCATTTCTTCTTGGCTGCGGACT
TGGTGACCTTGGCACCTGTGGGATCCTTCTTCTCAACACTCTTGATAACA
CCCACAGCAACAGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGG
TGGGTAGTCGGAGAATGTCTCAACAACCATGGGCTTGGTGGGAATCATCT
TAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGC
TCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTGAC
GGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAA
TCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAATTGGCAGCT
TCCCTGGCCGGATCA
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