CN182072

Overview
NameCN182072
Unique NameCN182072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_MYCTU (Probable acetyl-CoA acetyltransferase OS=Mycobacterium tuberculosis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 263
            +A+I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LGLNP  VNV+GGA+A+GHPLG SG RI
Sbjct:  269 LAEIGAHGVVAGPDSTLQSQPANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_MYCBO (Probable acetyl-CoA acetyltransferase OS=Mycobacterium bovis GN=fadA4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 263
            +A+I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LGLNP  VNV+GGA+A+GHPLG SG RI
Sbjct:  269 LAEIGAHGVVAGPDSTLQSQPANAINKALDREGISVDQLDVVEINEAFAAVALASIRELGLNPQIVNVNGGAIAVGHPLGMSGTRI 354          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +A I   A A   P +    P  A  KA+  AGL  + +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  268 LAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            +A+I  +A A   P++  T P  A  KA+  AG   + ++  E NEAFA  A A  K LG +P  VNV+GGA+A+GHP+G SGAR+L TLL
Sbjct:  273 LARIVSWATAGVDPQIMGTGPIPASRKALEKAGWSVADIELVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARVLNTLL 363          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +A I   A A   P +    P  A  KA+  AGL  + +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  268 MAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            + K   +A     PE+    P  AIP+A+  AGL+   +  +E+NEAFA  A+   + LG++ +KVNV+GGA+ALGHPLGC+G ++ ++L+  +++
Sbjct:  271 LVKFRSFAVGGVPPEVMGIGPVEAIPRALKLAGLQLQDIGLFELNEAFASQAIQVIRELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKR 366          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            +A+I  YA A   P +    P  A  +A+  AG    Q+D  E NEAFA  +LA  + LG +  +VNV+GGA+ALGHP+G SG R+LVTLL
Sbjct:  273 LARIASYASAGVDPAIMGIGPVSATRRALDKAGWSLEQLDLIEANEAFAAQSLAVGRELGWDAARVNVNGGAIALGHPIGASGCRVLVTLL 363          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THLA_CLOAB (Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum GN=thlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +AKI  Y  A   P +    P  A   AI  AG    ++D  E NEAFA  +LA  K L  + +KVNV+GGA+ALGHP+G SGARILVTL+  +++
Sbjct:  272 LAKIVSYGSAGVDPAIMGYGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQK 367          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +A I   A A   P +    P  A  KA+  AGL  + +D  E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  268 LAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARI 263
            + +I  +   A       + PA AI KA+   G+   Q+D  EINEAFA VALA+ + LG+ P+ VNV+GGA+A+GHPLG SGARI
Sbjct:  273 LVEIGAHGVVAGPDSTLQSQPANAIKKAVDREGISVEQLDVVEINEAFAAVALASARELGIAPELVNVNGGAIAVGHPLGMSGARI 358          
The following BLAST results are available for this feature:
BLAST of CN182072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIL_MYCTU3.790e-1651.16Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_MYCBO3.790e-1651.16Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
FADA_PSEPF3.790e-1647.473-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
THIL_RHIME4.950e-1647.25Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
FADA_PSEF54.950e-1647.473-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_BACSU4.950e-1639.583-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
ATOB_PSEAE4.950e-1647.25Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
THLA_CLOAB6.465e-1646.88Acetyl-CoA acetyltransferase OS=Clostridium acetob... [more]
FADA_PSEFR6.465e-1647.473-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
THIL_MYCLE8.444e-1648.84Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182072 ID=CN182072; Name=CN182072; organism=Citrus sinensis; type=EST; length=530bp
GAGGGATCGCCAAGATCACAGGATATGCTGATGCTGCTCAGGCACCAGAG
ATGTTTACGACAGCTCCAGCCCTAGCCATACCTAAAGCCATTTCAAATGC
TGGCTTGGAGGCTTCTCAAGTTGACTGTTACGAAATAAATGAGGCCTTTG
CTGTCGTCGCCCTTGCAAACCAGAAATTGCTTGGACTAAATCCTGACAAG
GTTAATGTCCATGGTGGAGCAGTAGCTTTGGGACATCCTCTGGGCTGCAG
CGGAGCTCGTATCTTGGTCACACTTTTGGGGGTACTTAGGCAGAAAAACG
GGAAATACGGTGTTGGTGGCGTTTGCAACGGAGGAGGAGGTGCATCGGCA
CTTGTTGTAGAGCTTGTGTAAGCCTTTTCTGTTCGGATTATTATCAACGA
GGTTGCACCCTTCTTGTGGAGTATAATTATGGCCCATTAGGGTGGGGTGT
TGTGCAATTGTATCTCCGTTTCTTTTTCATATGTGCTTTCGTCTTCAATA
AAAAGATAATAATTTTCTGGCTTAAAAAAA
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