CN182072

Overview
NameCN182072
Unique NameCN182072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGLE + +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            AKI   A A     +    P  A  KA+  AGL    +D +E+NEAFA  +L   K LGL     +KVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 AKIRAMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLFELNEAFAAQSLPCVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEE 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            IA +  +  +  AP +    P  AI KA+  +    + VD +E+NEAFA  ++A  + L L  DKVNV+GGA+ALGHP+G SGAR LV+LL
Sbjct:  273 IAVLDSFGASGVAPSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLVSLL 363          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            IA +  +  +  AP +    P  AI KA+  +    + VD +E+NEAFA  ++A  + L L  DKVNV+GGA+ALGHP+G SGAR LV+LL
Sbjct:  273 IAVLDSFGASGVAPSIMGIGPVEAIHKALKRSNKVINDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLVSLL 363          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            + +I  +A     P++  T P  A  KA+  AG +   +D  E NEAFA  A A  K LG +P  VNV+GGA+A+GHP+G SGARIL TLL
Sbjct:  272 LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLL 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXXASALVVELV 368
            AKI         P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q                  AL++E V
Sbjct:  280 AKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 51/122 (41.80%), Postives = 63/122 (51.64%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPD--KVNVHGGAVALGHPLGCSGARILVTLLGVLRQXXXXXXXXXXXXXXXXASALVVELV 368
            AKI         P +   APA AI K +  A L   Q+D  E+NEAFA  ALA  + LGL  D  +VN +GGA+ALGHPLG SGAR++ T L  L Q                  AL++E V
Sbjct:  280 AKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQLEQSGGKYALCSMCIGVGQGIALIIERV 401          
The following BLAST results are available for this feature:
BLAST of CN182072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
FADA_YERPN2.457e-1546.943-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE2.457e-1546.943-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA2.457e-1546.943-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP32.457e-1546.943-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_AERHH2.457e-1546.943-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
THLA_STAES3.209e-1546.15Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ3.209e-1546.15Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIL_ZOORA3.209e-1547.25Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
PCAF_ACIAD3.209e-1541.80Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
CATF_ACIAD3.209e-1541.80Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182072 ID=CN182072; Name=CN182072; organism=Citrus sinensis; type=EST; length=530bp
GAGGGATCGCCAAGATCACAGGATATGCTGATGCTGCTCAGGCACCAGAG
ATGTTTACGACAGCTCCAGCCCTAGCCATACCTAAAGCCATTTCAAATGC
TGGCTTGGAGGCTTCTCAAGTTGACTGTTACGAAATAAATGAGGCCTTTG
CTGTCGTCGCCCTTGCAAACCAGAAATTGCTTGGACTAAATCCTGACAAG
GTTAATGTCCATGGTGGAGCAGTAGCTTTGGGACATCCTCTGGGCTGCAG
CGGAGCTCGTATCTTGGTCACACTTTTGGGGGTACTTAGGCAGAAAAACG
GGAAATACGGTGTTGGTGGCGTTTGCAACGGAGGAGGAGGTGCATCGGCA
CTTGTTGTAGAGCTTGTGTAAGCCTTTTCTGTTCGGATTATTATCAACGA
GGTTGCACCCTTCTTGTGGAGTATAATTATGGCCCATTAGGGTGGGGTGT
TGTGCAATTGTATCTCCGTTTCTTTTTCATATGTGCTTTCGTCTTCAATA
AAAAGATAATAATTTTCTGGCTTAAAAAAA
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