CN182072

Overview
NameCN182072
Unique NameCN182072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13509 contig Csv1_Contig13509:10..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.191e-15
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +A++ GY  +   P +    P  AI  A+  AGL    +D  ++NEAFA   L+ QK L L+P K NV GGA+ALGHPLG SG+RI   L+  LR+
Sbjct:  276 LARVVGYFVSGCDPTIMGIGPVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRR 371          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.191e-15
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 278
            +A++  +A A   P +  T P  A  K +  AG   + +D  E NEAFA  A++  + +G +  KVNV+GGA+A+GHP+G SGAR+LVTLL
Sbjct:  274 MARLVAFASAGVDPAIMGTGPIPASTKCLEKAGWTPADLDLIEANEAFAAQAMSVNQDMGWDLSKVNVNGGAIAIGHPIGASGARVLVTLL 364          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    6 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            +A+I GY  +   P +    P  AI  A+   GL    +D  E+NEAFA   LA +K L L+P K NV+GGA+ALGHPL  SG+RI   L+  LR+
Sbjct:  276 LARIVGYFVSGCDPTIMGIGPVPAISGALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAHLVHELRR 371          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGL+   +  +E+NEAFA  +LA  K LGL     DKVN++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLKLEDIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_ENT38 (3-ketoacyl-CoA thiolase OS=Enterobacter sp. (strain 638) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGL AS++D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASEIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TLL ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLAASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVL 287
            A+I   A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     DKVN++GGA+ALGHPLGCSG RI  TL+ ++
Sbjct:  265 ARIKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLM 360          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGL---NPDKVNVHGGAVALGHPLGCSGARILVTLLGVL 287
            A+I   A A   P +    P  A  KA+  AGL    +D  E+NEAFA  +L   K LGL     DKVN++GGA+ALGHPLGCSG RI  TL+ ++
Sbjct:  265 ARIKAMAVAGCDPSIMGYGPVPATHKALKRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLDMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLM 360          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER 362          
BLAST of CN182072 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 3
Query:    9 AKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNP---DKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 293
            A+I   A     P +    P  A   A+  AGL AS +D +E+NEAFA   L   K LGL     +K+N++GGA+ALGHPLGCSGARI  TL+ ++ +
Sbjct:  265 ARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER 362          
The following BLAST results are available for this feature:
BLAST of CN182072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIM_MOUSE4.191e-1544.793-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
THIL_CHRVI4.191e-1543.96Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
THIM_BOVIN9.336e-1544.793-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
FADA_YERE89.336e-1545.923-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADA_ENT389.336e-1544.903-ketoacyl-CoA thiolase OS=Enterobacter sp. (strai... [more]
FADA_CITK89.336e-1545.923-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]
FADA_VIBCH1.219e-1446.883-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC31.219e-1446.883-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_SALTY1.219e-1444.903-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI1.219e-1444.903-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182072 ID=CN182072; Name=CN182072; organism=Citrus sinensis; type=EST; length=530bp
GAGGGATCGCCAAGATCACAGGATATGCTGATGCTGCTCAGGCACCAGAG
ATGTTTACGACAGCTCCAGCCCTAGCCATACCTAAAGCCATTTCAAATGC
TGGCTTGGAGGCTTCTCAAGTTGACTGTTACGAAATAAATGAGGCCTTTG
CTGTCGTCGCCCTTGCAAACCAGAAATTGCTTGGACTAAATCCTGACAAG
GTTAATGTCCATGGTGGAGCAGTAGCTTTGGGACATCCTCTGGGCTGCAG
CGGAGCTCGTATCTTGGTCACACTTTTGGGGGTACTTAGGCAGAAAAACG
GGAAATACGGTGTTGGTGGCGTTTGCAACGGAGGAGGAGGTGCATCGGCA
CTTGTTGTAGAGCTTGTGTAAGCCTTTTCTGTTCGGATTATTATCAACGA
GGTTGCACCCTTCTTGTGGAGTATAATTATGGCCCATTAGGGTGGGGTGT
TGTGCAATTGTATCTCCGTTTCTTTTTCATATGTGCTTTCGTCTTCAATA
AAAAGATAATAATTTTCTGGCTTAAAAAAA
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