CN182071

Overview
NameCN182071
Unique NameCN182071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIL_HUMAN (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.944e-19
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            +A+I  +ADAA  P  F  AP  A    + + GL+   +  +E+NEAF++V LAN K+L ++P KVN++GGAV+LGHP+G SGARI+  L   L+Q
Sbjct:  309 LARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ 404          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = -2
Query:  206 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLR 490
            +A+I  YA     P +    P  A  KA+  AGL+ + +D  E NEAFA   LA  K LG + +KVNV+GGA+ALGHP+G SGARILVTLL  ++
Sbjct:  273 LARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQ 367          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            +A I G++           AP  AI K +   GL    +D +E+NEAFA V L  +K++G + +KVNV+GGA+ALGHP+G SGARIL+TL+  L++
Sbjct:  273 LATILGFSTTGMPAHELAAAPGFAINKLLKKNGLTVQDIDLFEVNEAFASVVLTCEKIVGFDLEKVNVNGGAIALGHPIGASGARILMTLVYELKR 368          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  203 ITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 481
            +  YA     P++    PA AIP A+  AGL  S VD +EINEAFA  A    + L L P+KVN  GGAVALGHPLGC+GAR ++TLL  L++
Sbjct:  304 LRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKR 396          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  203 ITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 481
            +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  AL   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L++
Sbjct:  304 LRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKR 396          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  203 ITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 481
            +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  AL   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L++
Sbjct:  304 LRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKR 396          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = -2
Query:  206 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFA---VVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLR 490
            IAKI   A A   P +    P  A  KA+  AGL+   +D +E+NEAFA   +  L + KLLG+  +KVN++GGA+ALGHPLGCSGARI  TLL +++
Sbjct:  268 IAKIRSMAVAGCDPAIMGYGPVPATKKALKRAGLKVEDIDFWELNEAFAGQSLPVLKDLKLLGVMEEKVNLNGGAIALGHPLGCSGARISTTLLNIMQ 365          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  218 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 490
            +A I GYA     PE+    P  A  KA+S AG     +D  E NEAFA  AL   K LG   DKVNV+GGA+ALGHP+G SG R+LVTLL
Sbjct:  272 LAIIKGYALTGCEPEIMGIGPVSATRKALSKAGWTVEDLDLVEANEAFAAQALGVAKELGWGSDKVNVNGGAIALGHPIGASGCRVLVTLL 362          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  203 ITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 481
            +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L++
Sbjct:  304 LRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKR 396          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  203 ITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 481
            +  YA     P++    PA AIP A+  AGL  + +D +EINEAFA  A+   + LG+  +KVN  GGA+ALGHPLGC+GAR +VTLL  L++
Sbjct:  304 LRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKR 396          
The following BLAST results are available for this feature:
BLAST of CN182071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIL_HUMAN8.944e-1946.88Acetyl-CoA acetyltransferase, mitochondrial OS=Hom... [more]
ATOB_ECOLI3.399e-1849.47Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THL_BACSU5.797e-1844.79Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]
THIK_HUMAN5.797e-1851.613-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKB_RAT5.797e-1849.463-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_RAT5.797e-1849.463-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
FADA_MARAV7.572e-1848.983-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
THIL_CHRVO1.292e-1752.75Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]
THIKB_MOUSE1.292e-1748.393-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE1.292e-1748.393-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O15_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182071 ID=CN182071; Name=CN182071; organism=Citrus sinensis; type=EST; length=494bp
GAAGACGAAAGCCATATGAAAAAGAAACGGAGATACAATTGCACAACACC
CCACCCTAATGGGCCATAATTATACTCCACAAGAAGGGTGCAACCTCGTT
GATAATAATCCGAACAGAAAAGGCTTACACAAGCTCTACAACAAGTGCCG
ATGCACCTCCTCCTCCGTTGCAAACGCCACCAACACCGTATTTCCCGTTT
TTCTGCCTAAGTACCCCCAAAAGTGTGACCAAGATACGAGCTCCGCTGCA
GCCCAGAGGATGTCCCAAAGCTACTGCTCCACCATGGACATTAACCTTGT
CAGGATTTAGTCCAAGCAATTTCTGGTTTGCAAGGGCGACGACAGCAAAG
GCCTCATTTATTTCGTAACAGTCAACTTGAGAAGCCTCCAAGCCAGCATT
TGAAATGGCTTTAGGTATGGCTAGGGCTGGAGCTGTCGTAAACATCTCTG
GTGCCTGAGCAGCATCAGCATATCCTGTGATCTTGGCGATCCCT
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