CN182071

Overview
NameCN182071
Unique NameCN182071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  203 YADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 472
            +A     P +    PA+AIP A+  AGLE   +D +EINEAFA   +  +  LGL+P+K+NV+GGA+A+GHPLG +GAR + TLL  +++
Sbjct:  323 FAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKR 412          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.758e-17
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  209 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVL 490
            +AKI   A A   P +    P  A  KA+  AGL+   +D +E+NEAFA  +L    + KL+G+   KVN++GGA+ALGHPLGCSGARI  TLL V+
Sbjct:  268 MAKIRSMATAGCDPAIMGYGPVPATKKALKRAGLKVEDIDFWELNEAFAAQSLPVIKDLKLMGVVDQKVNLNGGAIALGHPLGCSGARISTTLLNVM 364          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFA---VVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            IAK+   A A   P +    P  A  KA+  AGL  + +D  E+NEAFA   +  L +  LL L  DKVN++GGA+ALGHPLGCSG RI  TLL V+R+
Sbjct:  268 IAKVRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQSIPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVMRE 366          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  203 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 451
            PE+    PA AIPK +   GL+   +D +EINEAFA  AL     LG++ +KVN  GGA+ALGHPLGC+GAR + T+L  L++
Sbjct:  312 PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKK 394          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            +A I   A A   P +    P  A  KA+  AGL  S +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  268 LAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  203 PEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 451
            P +    PA+AIP A+  AGLE + VD +EINEAFA   +  +  LGL+ +K+NV+GGA+A+GHPLG +GAR + TLL  +++
Sbjct:  322 PAIMGVGPAVAIPAAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGHPLGATGARCVATLLHEMKR 404          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = -2
Query:  206 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQK---LLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLR 490
            IAKI   A A   P +    P  A  KA++NAGL    +D  E+NEAFA  AL   K   LL    DKVN++GGA+ALGHP GCSG RI  TLL V++
Sbjct:  268 IAKIRSMALAGVDPSIMGYGPVPATQKALANAGLSIEDIDVVELNEAFAAQALPVLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTRITGTLLSVMQ 365          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALA---NQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            +A I   A A   P +    P  A  KA+  AGL  + +D +E+NEAFA  AL    + K+L    +KVN+HGGA+ALGHP GCSGARI  TLL V++Q
Sbjct:  268 MAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSIADIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ 366          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  203 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLLGVLRQ 490
            +A I  YA+A   P++    P  A  +A+S A      +D  EINEAFA  ALA  + +G +  KVNV+GGA+A+GHP+G SG RILVTLL  +++
Sbjct:  273 LATIKSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKR 368          
BLAST of CN182071 vs. ExPASy Swiss-Prot
Match: THIL_PARDE (Acetyl-CoA acetyltransferase OS=Paracoccus denitrificans GN=phaA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  218 IAKITGYADAAQAPEMFTTAPALAIPKAISNAGLEASQVDCYEINEAFAVVALANQKLLGLNPDKVNVHGGAVALGHPLGCSGARILVTLL 490
            +A+I  YA A   P++  T P  A  KA+  AG     +D  E NEAFA  A+A  + +G +P  VNV+GGA+A+GHP+G SG RIL TLL
Sbjct:  271 LARIASYATAGVDPQIMGTGPIPASRKALEKAGWSVGDLDLVEANEAFAAQAIAVNRDMGWDPSIVNVNGGAIAIGHPIGASGCRILNTLL 361          
The following BLAST results are available for this feature:
BLAST of CN182071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
THIK2_ARATH3.758e-1746.673-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
FADA_HAHCH3.758e-1748.453-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_MARMS6.410e-1748.483-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
THIK_YEAST8.371e-1750.603-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_PSESM8.371e-1748.483-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIK1_ARATH1.093e-1649.403-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_SACD21.093e-1650.003-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_PSEU22.436e-1647.473-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIL_RALEH3.181e-1645.83Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
THIL_PARDE3.181e-1647.25Acetyl-CoA acetyltransferase OS=Paracoccus denitri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O15_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182071 ID=CN182071; Name=CN182071; organism=Citrus sinensis; type=EST; length=494bp
GAAGACGAAAGCCATATGAAAAAGAAACGGAGATACAATTGCACAACACC
CCACCCTAATGGGCCATAATTATACTCCACAAGAAGGGTGCAACCTCGTT
GATAATAATCCGAACAGAAAAGGCTTACACAAGCTCTACAACAAGTGCCG
ATGCACCTCCTCCTCCGTTGCAAACGCCACCAACACCGTATTTCCCGTTT
TTCTGCCTAAGTACCCCCAAAAGTGTGACCAAGATACGAGCTCCGCTGCA
GCCCAGAGGATGTCCCAAAGCTACTGCTCCACCATGGACATTAACCTTGT
CAGGATTTAGTCCAAGCAATTTCTGGTTTGCAAGGGCGACGACAGCAAAG
GCCTCATTTATTTCGTAACAGTCAACTTGAGAAGCCTCCAAGCCAGCATT
TGAAATGGCTTTAGGTATGGCTAGGGCTGGAGCTGTCGTAAACATCTCTG
GTGCCTGAGCAGCATCAGCATATCCTGTGATCTTGGCGATCCCT
back to top