CN182061

Overview
NameCN182061
Unique NameCN182061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:450..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = -2
Query:   23 ENVEVTKKHKNIMFIGDGRTR--TIITGSRNVVDGST------TFKSATVAVVGEGFLARDITFQNT----AGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDL 517
            E V V K    I FIG+      T+I+ S    D         T+++A+V++  + F A  ITF+NT    AG    QAVALR+  D + FY   +L  QDTL+  +   +F  C I G VDFIFGNA ++ Q+CDIH+     G    + A  R    ++TG       I  T  +
Sbjct:  121 EKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYG---AIAAHHRDSETEDTGFSFVNCDISGTGQI 294          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.232e-18
Identity = 60/176 (34.09%), Postives = 82/176 (46.59%), Query Frame = -2
Query:   23 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST------TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDL 517
            E V V      I F G GR  T I       D         T+++A+V V    F AR+I+F NTA     G    QAVA R+  D + F  C     QDTL   + R +F  C I G++DFIFGN  ++ ++C++H+     G    + A GRT P + TG      R+  T  L
Sbjct:  100 EKVVVPATKPYITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGS---IAAHGRTCPEEKTGFAFVGCRVTGTGPL 272          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 64/193 (33.16%), Postives = 93/193 (48.19%), Query Frame = -2
Query:   11 NVEVTKKHKNIMFIGDGRTRTIITGSRNV----VDGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQ 514
            N  +T    N++  G+ R   +I  +        DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD  P +
Sbjct:   69 NERLTITRNNLLLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK 261          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 64/193 (33.16%), Postives = 92/193 (47.67%), Query Frame = -2
Query:   11 NVEVTKKHKNIMFIGDGRTRTIITGSRNV----VDGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQ 514
            N  +T    N+   G+ R   +I  +        DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTVDFIFG+  A+  NCD+ +R      SG  +       T+ NQ  G+VI  SR+   SD  P +
Sbjct:   69 NERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK 261          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 56/166 (33.73%), Postives = 81/166 (48.80%), Query Frame = -2
Query:   32 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGP----SKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGAT 517
            E V +      I  +G     T++T         T  +SAT+ V  E F A  +T +NTA      S+ QA+A+R+ AD +AFY+C    +QDTL       FF +C I GT DFIFG  A++  N  +HA     G + ++TAQGR    +  G      ++  T
Sbjct:  106 EKVTIDIARPFITLLGQPGAETVLTYHGTAAQYGTV-ESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA--VGDGLR-VITAQGRQSATEQNGYTFVHCKVTGT 267          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.940e-16
Identity = 51/165 (30.91%), Postives = 83/165 (50.30%), Query Frame = -2
Query:   41 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-----PSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRI 517
            E V + +    I   G+G+ +T+I  S++ VD      SAT  V    F+A  I+ +N A       S++Q+VA  V AD  AFY+C   +  +TL+ +  R ++  C I G++DFIFG A ++  NC+I        +    +TA  R    + TG V  + ++
Sbjct:   85 ERVHIPENKPFIFMRGNGKGKTVIESSQSSVDNVA---SATFKVEANHFVAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKV 246          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 50/143 (34.97%), Postives = 70/143 (48.95%), Query Frame = -2
Query:    2 DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAAVLQNCDIH-ARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSF 424
            D + TF++  V     G    ++   NT G + HQA+AL   AD   +Y C+   YQDTL   +  Q ++N  I G VDFIFG +A A  QN DI     P S     +TA GR+     +  VI KS + A       +G++
Sbjct:  110 DLTATFRNKAV-----GSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPTSAS---ITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY 244          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 55/160 (34.38%), Postives = 78/160 (48.75%), Query Frame = -2
Query:   29 GDGRTRTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARD-------ITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK---NMVTAQGRTDPNQNTGIVIQKSRI-GATS 472
            G+G+  T IT       D S+TF S    +V       +       +T  N        AVA+ V  D SAFYNCD L  QDT++ +  R  F NC I G +DFIFG+  +V ++C I+A       K     +TAQGR+  +  +G V  +  + G+TS
Sbjct:   42 GEGQRVTTITYNGHAATDVSSTFTSYPSHIVVRNLSIMNTYNRLTSLTKANGMSWDIKPAVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGSVSGSTS 201          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = -2
Query:   59 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRTDPNQNTGIV 517
            E + + +K   I+ +G G+  T +       D ++  +S T A + +  + + ITF N+   PS  +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFI G+  ++ Q+C I     +   G    +TAQGRT+ N   G V
Sbjct:   68 EKITIPQKKPFIVIVGAGKRSTRVEWD----DHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFV 227          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = -2
Query:   59 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRTDPNQNTGIV 517
            E +++  +   I+ +G G+  T +       D  +  +S T + + +  + + ITF N+   PSK +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFIFG   ++ Q+C I     +   G    +TAQGRT+P    G +
Sbjct:   73 EKIKIPYEKPFIVLVGAGKRLTRVEWD----DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFI 232          
The following BLAST results are available for this feature:
BLAST of CN182061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME62_ARATH1.309e-1835.03Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME68_ARATH2.232e-1834.09Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH7.181e-1733.16Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD32.089e-1633.16Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME50_ARATH2.089e-1633.73Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME67_ARATH7.940e-1630.91Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME_ASPAC8.779e-1534.97Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME52_ARATH8.779e-1534.38Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME55_ARATH1.956e-1431.71Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME29_ARATH1.956e-1431.10Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182061 ID=CN182061; Name=CN182061; organism=Citrus sinensis; type=EST; length=518bp
GGAAACTACCCTGAACCGGTTTTAAATCGGAGGTGGCACCAATCCTAGAT
TTTTGAATGACAATGCCGGTGTTTTGGTTAGGGTCAGTCCTGCCTTGGGC
TGTGACCATATTTTTTTGGCCGGAATTGGGCTTTCGTGCATGGATGTCAC
AATTTTGTAACACGGCTGCAGCATTACCAAAAATGAAATCAACCGTGCCA
GCAATTAAGCAGTTCACAAAGAACTGGCGGTTCGAGTGGACGTAGAGTGT
GTCTTGGTAAGCTAACATATCGCAATTGTAAAATGCTGAAAGGTCAGCTC
CCACTCGCAGTGCCACTGCCTGGTGCTTTGAGGGGCCTGCTGTGTTTTGG
AATGTAATGTCTCGGGCCAAGAATCCTTCACCAACAACAGCAACTGTAGC
AGACTTGAAAGTTGTGCTTCCATCAACCACATTTCTACTTCCTGTGATGA
TAGTTCTAGTCCTTCCGTCACCGATGAACATTATATTTTTATGCTTCTTT
GTCACCTCAACATTTTCC
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