CN182061

Overview
NameCN182061
Unique NameCN182061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 48/151 (31.79%), Postives = 72/151 (47.68%), Query Frame = -2
Query:    2 ITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAAVLQNCDIHARK-PNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSF 448
            IT +  + D     ++AT+    EG    ++   NT G + HQA+A+   A    +Y C    YQDTL   +  Q +    I G VDFIFG +A A    CDI   + P+S     +TA GR+  + ++  VI KS + A        G++
Sbjct:   96 ITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSAS---ITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY 243          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  137 TFKSATVAVVGEGFLARDITFQNTAGPSKH----QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA 412
            T +SAT+ V    FLA ++   NT+   K     QA+A+R+  D +AFYNC    +QDTL       FF NC I GT DFIFG  A++     +HA
Sbjct:  140 TVESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA 235          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 50/165 (30.30%), Postives = 77/165 (46.67%), Query Frame = -2
Query:   53 ENVEVTKKHKNIMFIGDGRTRTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR---KPNSGQKNMVTAQGRTDPNQNTGIVIQ 517
            E V + +    I   G G  +TII  G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G +DFIFG A ++ + C +  R    P +     +TAQGR  P    G V +
Sbjct:   80 EKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFK 238          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  140 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST----TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH 517
            E V + +    I  +G      +IT      DG+     T  SA++ ++ + F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H
Sbjct:  105 EKVTIDRNKPFITLMGQPNAMPVIT-----YDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLH 234          
BLAST of CN182061 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = -2
Query:  140 ENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST----TFKSATVAVVGEGFLARDITFQNTA----GPSKH-QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH 517
            E V + +    I  +G      +IT      DG+     T  SA++ ++ + F+A +I  +NTA    G +K  QA+++R+  + +AFYNC    +QDT+   +   FF +C + GT DFIFG+  ++     +H
Sbjct:  105 EKVTIDRNKPFITLMGQPNAMPVIT-----YDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLH 234          
The following BLAST results are available for this feature:
BLAST of CN182061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME_ASPTU3.688e-1331.79Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME49_ARATH3.688e-1341.67Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME10_ARATH4.078e-1230.30Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PPME1_ARATH9.085e-1230.37Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH9.085e-1230.37Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182061 ID=CN182061; Name=CN182061; organism=Citrus sinensis; type=EST; length=518bp
GGAAACTACCCTGAACCGGTTTTAAATCGGAGGTGGCACCAATCCTAGAT
TTTTGAATGACAATGCCGGTGTTTTGGTTAGGGTCAGTCCTGCCTTGGGC
TGTGACCATATTTTTTTGGCCGGAATTGGGCTTTCGTGCATGGATGTCAC
AATTTTGTAACACGGCTGCAGCATTACCAAAAATGAAATCAACCGTGCCA
GCAATTAAGCAGTTCACAAAGAACTGGCGGTTCGAGTGGACGTAGAGTGT
GTCTTGGTAAGCTAACATATCGCAATTGTAAAATGCTGAAAGGTCAGCTC
CCACTCGCAGTGCCACTGCCTGGTGCTTTGAGGGGCCTGCTGTGTTTTGG
AATGTAATGTCTCGGGCCAAGAATCCTTCACCAACAACAGCAACTGTAGC
AGACTTGAAAGTTGTGCTTCCATCAACCACATTTCTACTTCCTGTGATGA
TAGTTCTAGTCCTTCCGTCACCGATGAACATTATATTTTTATGCTTCTTT
GTCACCTCAACATTTTCC
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