CN182055

Overview
NameCN182055
Unique NameCN182055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.232e-59
Identity = 107/143 (74.83%), Postives = 131/143 (91.61%), Query Frame = 3
Query:   72 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            LT DQI+EFKEAF LFDKDGDGCIT +EL TV+RSL QNPTE EL D+I E+D+D NGTI+F EFLNLMA+K++++D+EEELKEAF+VFDKDQNG+ISA+EL HVM NLGEKLTDEEV++MI+EAD+DGDGQ+NY+EFVK+M+
Sbjct:    6 LTKDQITEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMI 148          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.354e-57
Identity = 107/145 (73.79%), Postives = 128/145 (88.28%), Query Frame = 3
Query:   72 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            LTD+QI+EF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTIDF EFL +MARKMKDTD+EEE++EAF+VFDKD NG+I+  EL HV+T+LGE+L+ EEV +MIREAD DGDG INYEEF +V+ +K
Sbjct:    6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.664e-56
Identity = 103/147 (70.07%), Postives = 130/147 (88.44%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            D LT +QI+EF+EAF+LFDKDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ EVDADG+G+I+F EFL L+ARK++DT +E++++EAFRVFDKDQNGFI+  ELRHVM NLG+ L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:    2 DHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.840e-55
Identity = 101/147 (68.71%), Postives = 129/147 (87.76%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            D LT +QI+EF+EAF+LFDKDGDG IT+KELGTVM SLGQ+PTEAEL+ M+ EVDADG+G+I+F EFL L+ARK++DT +E+++++AFRVFDKDQNGFI+  ELRHVM NL + L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:    2 DHLTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.193e-54
Identity = 101/149 (67.79%), Postives = 131/149 (87.92%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            MA++L++ QI+EFKEAFSLFDKD DG ITTKELGTVMRSLGQNP+E+EL DMINEVD + +G+IDFPEFL +MARKMKDTDSE E+ EAF+VFD++ +G ISAAELRH++T++GEKL+D +VD+MI+EAD + DG+I+ +EF  ++ AK
Sbjct:    1 MAEKLSEQQIAEFKEAFSLFDKDSDGKITTKELGTVMRSLGQNPSESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEADTNNDGEIDIQEFTSLLAAK 149          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.012e-53
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   72 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            LT +Q+  F+EAF LFDK+GDGCIT +EL  V RSLG  PT+ EL DM+ EVD DGNG IDF EFL+L+ARKMKD D +EELKEAF V DKDQNGFIS  ELR VMTNLGEK+TDEEV++MIREAD DGDGQ+NY+EFV +M
Sbjct:    4 LTSEQMVAFQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDEFVIMM 145          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.691e-51
Identity = 94/146 (64.38%), Postives = 124/146 (84.93%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            +LT++QI+EFK+AF  FDK+G G I T+ELGT+MR+LGQNPTEAELQD+I E + + NG ++F EF  +MA++M++TD+EEE++EAF++FD+D +GFIS AELR VM NLGEK+TDEE+DEMIREAD DGDG INYEEFV ++  K
Sbjct:    3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQK 148          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML5_ORYSJ (Calmodulin-like protein 5 OS=Oryza sativa subsp. japonica GN=CML5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.328e-50
Identity = 97/156 (62.18%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK------------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            ++  +Q++EF+E F+ FDKDGDGCIT +EL TV+RSLGQ PT  EL +MI +VD DGNGTI+F EFL LMARK                 ++EEL+EAF+VFDKDQ+G ISAAELRHVM +LGEKLTDEEV++MIREAD+DGDGQ+N++EFV++MM
Sbjct:    7 RVRQEQVAEFRETFAFFDKDGDGCITLEELDTVVRSLGQTPTREELAEMIRDVDVDGNGTIEFAEFLALMARKASRGGENGGGGDDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMMM 162          

HSP 2 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 278
            D   D    E +EAF +FDKD DG I+  EL  VM SLG+  T+ E++ MI E D DG+G ++F EF+ +M
Sbjct:   91 DDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMM 161          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.574e-49
Identity = 94/149 (63.09%), Postives = 122/149 (81.88%), Query Frame = 3
Query:   63 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            A +L++ QI+E K+AF +FD DGDG IT+KEL +VM+SLG+ P++AEL++MI EVD DGNGTI++ EF+ +MA++M  TD E+E++EAFRVFDKD NG I+AAELR VM N   EKLT EE+ EMIREAD+DGDG +NYEEFVK+M  K
Sbjct:    1 AKELSEKQIAEIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVEMMAKQMGPTDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEEISEMIREADIDGDGMVNYEEFVKMMTPK 149          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.390e-49
Identity = 94/143 (65.73%), Postives = 118/143 (82.52%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            QLT ++I EF+EAF +FDKDG+G I+TKELG  MRSLGQNPTE E+ +MINEVD DGNG I+FPEF  +M R MK+TDS E ++EAFRVFDKD NG I+A E R+ M ++G + ++EEVDEMI+E DVDGDG+I+YEEFVK+M
Sbjct:   17 QLTPEEIDEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMMKRMMKETDS-EMIREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEEFVKMM 158          
The following BLAST results are available for this feature:
BLAST of CN182055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CML8_ARATH1.232e-5974.83Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CALM_SCHPO3.354e-5773.79Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CML2_ORYSJ1.664e-5670.07Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML3_ORYSJ1.840e-5568.71Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CALM_CANAL1.193e-5467.79Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CML4_ORYSJ5.012e-5371.13Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CALL_DROME4.691e-5164.38Calmodulin-related protein 97A OS=Drosophila melan... [more]
CML5_ORYSJ2.328e-5062.18Calmodulin-like protein 5 OS=Oryza sativa subsp. j... [more]
CABO_LOLPE2.574e-4963.09Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CALL_CAEEL4.390e-4965.73Calmodulin-like protein OS=Caenorhabditis elegans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182055 ID=CN182055; Name=CN182055; organism=Citrus sinensis; type=EST; length=686bp
GAGGATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAAA
AAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAA
AGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCA
AGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCT
GAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTAT
TGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCG
ACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAG
AATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGG
GGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATG
TCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATG
GCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAAT
TGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAA
TTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCA
ATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTT
back to top