CN182055

Overview
NameCN182055
Unique NameCN182055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   72 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            LT  +  E KEAF LFD DG G I  KEL   MR+LG   TE ++  MI +VD DG+G IDF EF ++M  K+ + D++EEL +AFR+ D+D NG IS  +++ +   LGE  T +++ +MI EAD D DG++N EEF+++M
Sbjct:   19 LTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDFDEFCHMMTAKIGERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMM 160          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32
Identity = 65/142 (45.77%), Postives = 98/142 (69.01%), Query Frame = 3
Query:   72 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            LT  +  E KEAF LFD D  G I  KEL   MR+LG   TE ++  MI +VD DG+G+ID+ EF ++M  K+ + DS+EEL +AF + D+D+NG IS  +++ +   LGE  T +E+ EM++EAD +GDG+I+++EF+++M
Sbjct:   21 LTKQKRQEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMM 162          

HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  309 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 506
            +E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+YEEF  +M AK
Sbjct:   27 QEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAK 92          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: TNNC_TACTR (Troponin C OS=Tachypleus tridentatus PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 64/148 (43.24%), Postives = 106/148 (71.62%), Query Frame = 3
Query:   63 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            A+ L+ +Q+   ++AF +FD+D  G I T  + T++R+LGQ   E +L+D+I E+D DG+G ++F EF+ L AR + + D+E   EEL+EAFR++DK   GFI+ ++LR ++  L +KLT++E+DEMI E D DG G ++++EF+++M
Sbjct:    4 AEDLSKEQVQMLRKAFDMFDRDKKGVIHTNMVSTILRTLGQTFEEKDLKDLIAEIDQDGSGELEFEEFMALAARFLVEEDAEAMQEELREAFRLYDKQGQGFINVSDLRDILRALDDKLTEDELDEMIAEIDTDGSGTVDFDEFMEMM 151          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 70/146 (47.95%), Postives = 104/146 (71.23%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            MA +LT ++ +++K+AFS  D DG+G I  +ELG  +++ G+N +EA+L+ +I+EVD+DG+G I F EFL   A+K +     E+L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:    1 MAGELTPEEEAQYKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFLTA-AKKARA--GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 71/144 (49.31%), Postives = 104/144 (72.22%), Query Frame = 3
Query:   78 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            ++QISEFK AF +FD+DG G I+TKELGT+M+ LG + +  ELQ MI+EVD D +GTIDF EFL +MAR M+D++ E   +EL+ AFRV DK+ +GFI   E R + +   G+ LTD+E+ E + + D + DG+ +YEE+ +++
Sbjct:   13 EEQISEFKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 67/149 (44.97%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM---KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 503
            + L DDQ+ E +E F  FD++GDG +T  ELG+++RSLG  P+  EL  +I   D + NG I+F EF+ L+A ++   +   SE++++  F +FD+D NGFI+AAEL H M  LG  LT +E+  MI+EAD DGDG+I+++EF + + A
Sbjct:   55 EPLGDDQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITA 203          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 61/148 (41.22%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            ++L+ DQI +F++ F++FDK+G G I   ++G ++R++GQ   E +L+ +I E DADG+G I+F EF     N +     D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   10 EKLSADQIEQFRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          

HSP 2 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 31/63 (49.21%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   93 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 281
            E +EAF L+DK+G+G I   +L  ++R+L  N +E EL +MI E+DADG+GT+DF EF+ +M+
Sbjct:   96 ELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMMS 158          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.042e-31
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            MA +LT +Q+ E +E F LFD D DG I   EL T +RSLGQN  EAE +  + +  A G G      IDF  FL++ ARKM+   +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:    1 MAAKLTQEQVDECREIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: TNNC_HALRO (Troponin C, body wall muscle OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 3
Query:   66 DQLTDDQISEFKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD-------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            + LT+D+ S+F+ AF +F  D  DG I++KELG VM+ LGQNPTE +LQ+MI EVD DG+GTIDF EF  +M R+M+  +        E+EL EAFR+FD D +G     EL+  +   GE +   EVDEM+ + D + D QI+YEE+V +M
Sbjct:    2 EHLTEDEKSQFRAAFDIFVADAKDGTISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEFCLMMYRQMQAQEEAKIPEREEKELSEAFRLFDLDGDGI--GDELKAALDGTGENVETWEVDEMMADGDKNHDSQIDYEEWVTMM 151          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 65/149 (43.62%), Postives = 101/149 (67.79%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            M+D+LT +Q +  + AF+ FD + +G I T  +GT++  LG    +A L D+I EVD DG+G I+F EF  L AR + + D+E    ELKEAFR++DK+ NG+I+   LR ++  L +KLT++++D MI E D DG G ++++EF++VM
Sbjct:    1 MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVM 149          
The following BLAST results are available for this feature:
BLAST of CN182055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CATR_ATRNU4.411e-3347.18Caltractin OS=Atriplex nummularia PE=2 SV=1[more]
CML13_ORYSJ1.283e-3245.77Probable calcium-binding protein CML13 OS=Oryza sa... [more]
TNNC_TACTR2.189e-3243.24Troponin C OS=Tachypleus tridentatus PE=1 SV=1[more]
CALL5_HUMAN2.189e-3247.95Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
TNNC_BRALA3.734e-3249.31Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
CML11_ORYSJ3.734e-3244.97Probable calcium-binding protein CML11 OS=Oryza sa... [more]
TNNC2_CAEEL3.161e-3141.22Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
CML9_ORYSJ7.042e-3146.71Probable calcium-binding protein CML9 OS=Oryza sat... [more]
TNNC_HALRO1.569e-3048.03Troponin C, body wall muscle OS=Halocynthia roretz... [more]
TNNC1_DROME2.049e-3043.62Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182055 ID=CN182055; Name=CN182055; organism=Citrus sinensis; type=EST; length=686bp
GAGGATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAAA
AAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAA
AGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCA
AGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCT
GAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTAT
TGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCG
ACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAG
AATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGG
GGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATG
TCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATG
GCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAAT
TGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAA
TTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCA
ATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTT
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