CN182055

Overview
NameCN182055
Unique NameCN182055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLRV_HUMAN (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Homo sapiens GN=MYL2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            QI EFKEAF++ D++ DG I   +L     +LG+ N    E+ +MI E      G I+F  FL +   K+K  D EE +  AF+VFD +  G + A  +R ++T   E+ + EEVD+M      D  G ++Y+  V ++
Sbjct:   25 QIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAP----GPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHII 159          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLE_DICDI (Myosin, essential light chain OS=Dictyostelium discoideum GN=mlcE PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 47/140 (33.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   93 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE--ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-DGQINYEEFVKVMMA 503
            + +E FS+FDKD DG ++ +++G  +RSLG++PT A+++ +  E+ A      D     ++  +    T  E+  E+ +AF+  DK+ +G I  AELR ++T LG+ L+  EVDE+ +E  VD   G ++Y   V  +++
Sbjct:    7 QIQECFSIFDKDNDGKVSVEDIGACLRSLGKSPTMADIEALKTEIGAK---EFDINTLKSIYKKPNIKTPQEQQKEMLDAFKALDKEGHGTIQGAELRQLLTTLGDYLSTAEVDELFKEISVDSTTGAVSYASLVNTIVS 143          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: EFCB2_MOUSE (EF-hand calcium-binding domain-containing protein 2 OS=Mus musculus GN=Efcab2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 3
Query:   93 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLNLMARKMKD----TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            + K+AF +FD + +  +  +E+GT++RSLG  PTE EL D I E+ + +  G I F +F+ +M R + +      +E+ L  AF V D  + GF++  EL   MT  GE  + EE++EM+  A       INY +++ +M+
Sbjct:   20 KIKDAFEVFDHESNNTVDVREIGTIIRSLGCCPTEGELHDFIAEIEEEEPTGYIRFEKFIPVMTRALVERRYRPAAEDILLRAFEVLDPAKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMV 160          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML31_ARATH (Probable calcium-binding protein CML31 OS=Arabidopsis thaliana GN=CML31 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  102 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK---MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            E F   DK+ DG I   E    +R      T  E+  M   +D DG+G ID  EF + +       KDT+ E  +KEAF ++D D +G ISA+E+  V+  LGEK T E+   M++  D D DG +N+EEF K+MM
Sbjct:    3 EIFESVDKNKDGKILWDEFAEAIRVFSPQITSEEIDKMFIVLDVDGDGQIDDVEFASCLMVNGGGEKDTEEEVVMKEAFDLYDMDGDGKISASEIHVVLKRLGEKHTMEDCVVMVQTVDKDSDGFVNFEEF-KIMM 137          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB1_RAT (Calcineurin subunit B type 1 OS=Rattus norvegicus GN=Ppp3r1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            M      D+I    + F   D D  G ++ +E  + +  L QNP    +Q +I+  D DGNG +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   11 MCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB1_MOUSE (Calcineurin subunit B type 1 OS=Mus musculus GN=Ppp3r1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            M      D+I    + F   D D  G ++ +E  + +  L QNP    +Q +I+  D DGNG +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   11 MCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB1_HUMAN (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            M      D+I    + F   D D  G ++ +E  + +  L QNP    +Q +I+  D DGNG +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   11 MCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB1_BOVIN (Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            M      D+I    + F   D D  G ++ +E  + +  L QNP    +Q +I+  D DGNG +DF EF+  +++     D E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   11 MCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLR_BOMMO (Myosin regulatory light chain 2 OS=Bombyx mori PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK-DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 503
            Q++EFKEAF L D D DG I   +L     SLG+  +E EL +M+ E     +G I+F + L L A +M   +D ++ +  AF+ FD++  G I +  LRH +   G+K + +EVDE   + D+D  G I+  + + ++ A
Sbjct:   56 QVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFDEE--GKIDSERLRHALMTWGDKFSADEVDEAYDQMDIDDKGYIDTTKLIAMLTA 190          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLRV_RAT (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Rattus norvegicus GN=Myl2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            QI EFKEAF++ D++ DG I   +L     +LG+ N    E+ +MI E      G I+F  FL +   K+K  D EE +  AF+VFD +  G + A  +R ++T   E+ + EE+D+M      D  G ++Y+  V ++
Sbjct:   25 QIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAP----GPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREMLTTQAERFSKEEIDQMFAAFPPDVTGNLDYKNLVHII 159          
The following BLAST results are available for this feature:
BLAST of CN182055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
MLRV_HUMAN1.523e-1735.25Myosin regulatory light chain 2, ventricular/cardi... [more]
MLE_DICDI1.523e-1733.57Myosin, essential light chain OS=Dictyostelium dis... [more]
EFCB2_MOUSE1.523e-1734.75EF-hand calcium-binding domain-containing protein ... [more]
CML31_ARATH1.523e-1739.71Probable calcium-binding protein CML31 OS=Arabidop... [more]
CANB1_RAT1.523e-1735.10Calcineurin subunit B type 1 OS=Rattus norvegicus ... [more]
CANB1_MOUSE1.523e-1735.10Calcineurin subunit B type 1 OS=Mus musculus GN=Pp... [more]
CANB1_HUMAN1.523e-1735.10Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
CANB1_BOVIN1.523e-1735.10Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3... [more]
MLR_BOMMO1.989e-1735.46Myosin regulatory light chain 2 OS=Bombyx mori PE=... [more]
MLRV_RAT2.598e-1734.53Myosin regulatory light chain 2, ventricular/cardi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182055 ID=CN182055; Name=CN182055; organism=Citrus sinensis; type=EST; length=686bp
GAGGATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAAA
AAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAA
AGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCA
AGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCT
GAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTAT
TGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCG
ACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAG
AATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGG
GGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATG
TCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATG
GCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAAT
TGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAA
TTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCA
ATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTT
back to top