CN182055

Overview
NameCN182055
Unique NameCN182055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLR1_SCHPO (Myosin regulatory light chain 1 OS=Schizosaccharomyces pombe GN=rlc1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 488
            QLT  QI E KEAF+L DKDGDG I  +++ T++ SL Q+ +E    D IN +    N  I+   FL  M   +       +L EAF  FD  Q+G I  + +R  ++++G+++  +EV+ ++R       G   YE+FV
Sbjct:   41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILR--SYTSHGVFYYEKFV 174          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CDPKE_ARATH (Calcium-dependent protein kinase 14 OS=Arabidopsis thaliana GN=CPK14 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 46/146 (31.51%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            +A+ L+ ++ S  KE F + D    G IT  ELG  ++ LG    + ++Q +++  D D +G +D  EF+ +    ++   ++E LK+AF  FDK+++G+I   ELR  + +  +  ++E V+ +I + D + DG+I+Y+EF  +M
Sbjct:  348 IAEHLSVEETSCIKERFQVMDTSNRGKITITELGIGLQKLGIVVPQDDIQILMDAGDVDKDGYLDVNEFVAISVH-IRKLGNDEHLKKAFTFFDKNKSGYIEIEELRDALADDVDTTSEEVVEAIILDVDTNKDGKISYDEFATMM 492          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB_CRYNE (Calcineurin subunit B OS=Cryptococcus neoformans GN=CNB1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEE----VDEMIREADVDGDGQINYEEFVKVM 497
            ++   K+ F   DKDG G I   E   + + +  NP       MI   D DG+GT+DF EF+  ++        +E+L+ AF+V+D D++G+IS  EL  V+  + G  L D++    VD+ I EAD DGDG++++EEF +++
Sbjct:   22 ELMRLKKRFMKLDKDGSGSIDKDEFLQIPQ-IANNPLAHR---MIAIFDEDGSGTVDFQEFVGGLSAFSSKGGRDEKLRFAFKVYDMDRDGYISNGELYLVLKQMVGNNLKDQQLQQIVDKTIMEADKDGDGKLSFEEFTQMV 160          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLRB_PATYE (Myosin regulatory light chain B, smooth adductor muscle OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 46/143 (32.17%), Postives = 82/143 (57.34%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            +L   QI E KEAF++ D++ DG I   +L  +  SLG+ P + EL  M+ E      G ++F  FL++ + K+  TD+EE L+ AF +FD+     ++   ++ ++ N+G+  T +E+    +EA V G G+ +Y +F  ++
Sbjct:   11 KLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKEAP----GPLNFTMFLSIFSDKLSGTDTEETLRNAFAMFDELDTKKLNIEYIKDLLENMGDNFTKDEMRMTFKEAPVTG-GKFDYVKFTAMI 148          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML21_ORYSJ (Probable calcium-binding protein CML21 OS=Oryza sativa subsp. japonica GN=CML21 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 3
Query:   99 KEAFSLFDKDGDGCITTKELGTVMRSLGQN----PTEAELQDMINEVDADGNGTIDFPEFLNL------------MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 503
            +  F +FD+DGDG IT  EL   +  LG      P  A L  ++    A G   + F EF  L            +A    + + E +++EAF VFD+D +G+ISAAEL+ V++ +G  E      V +MI  AD D DG+++YEEF K MMA
Sbjct:   43 RRVFEMFDRDGDGVITPAELSGALCRLGARGEAPPAAAALDAVVAAYIAPGMAGLRFAEFEALHAELAGLGGRQAVAAAEAEEEKEADMREAFGVFDEDGDGYISAAELQAVLSRMGLPEAACMARVRDMIAAADRDSDGRVDYEEF-KAMMA 194          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MYL10_MOUSE (Myosin regulatory light chain 10 OS=Mus musculus GN=Myl10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            QI EFKEAF++ D++ DG I  ++L     +LG+ N    EL+ M+ E      G I+F  FL +   K+K TD EE +  AF+VFD +  GF+ A  ++  +    ++ ++EEV +M      D  G ++Y     V+
Sbjct:   61 QIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAP----GPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVI 195          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: MLRB_CHICK (Myosin regulatory light chain 2B, cardiac muscle isoform OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   84 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            QI EFKEAF++ D++ DG I   +L     +LG+ N    EL+DM+ E      G I+F  FL +   K+K TD EE +  AF++FD +  G I A  ++ ++     + + EE+++M      D  G ++Y+    V+
Sbjct:   24 QIQEFKEAFTIMDQNRDGFIDKADLRDTFAALGRLNVKNEELEDMVKEAP----GPINFTVFLTMFGEKLKGTDPEETILNAFKIFDPEGKGHIKADYIKEMLMTQEGRFSQEEINQMFAAFPPDVSGNLDYKNLCYVI 158          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   69 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 500
            Q + D  +E  +AF L D+D DG ++  +L  ++  L   P ++ E+  M+ EVD    G I   +  + +A    +   E EEL+E F +FD D+NG ISA EL  V   +G E+ T EE   MI   D +GDG + +++F ++M+
Sbjct:   62 QNSGDFYTELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLASRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIATVDGNGDGFVCFDDFCRMMV 208          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB_SCHPO (Calcineurin subunit B OS=Schizosaccharomyces pombe GN=cnb1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   75 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*VT 515
            ++++I   ++ F   D +  G I   E  ++  S+  NP  + L    + VD DG G +DF EF+N ++      + EE+LK AF+++D D++G+IS  EL  V+     TNL E    + VD+ I E D D DG+I++EEF  ++    VT
Sbjct:   19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVSGSNVT 166          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB_NEUCR (Calcineurin subunit B OS=Neurospora crassa GN=cnb-1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   81 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            +++   ++ F   DKD  G I  +E      SL Q  T      MI   D DG G +DF EF++ ++      + E++L+ AF+V+D D++G+IS  EL  V+     +NL ++   + VD+ I EAD+D DG+I++EEF K++
Sbjct:   21 EEVDRLRKRFMKLDKDNSGTIEREEF----LSLPQISTNPLATRMIAIFDEDGGGDVDFQEFVSGLSAFSSKGNKEQKLRFAFKVYDIDRDGYISNGELFIVLKMMVGSNLKDQQLQQIVDKTIMEADLDKDGKISFEEFTKMV 160          
The following BLAST results are available for this feature:
BLAST of CN182055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
MLR1_SCHPO2.199e-1635.71Myosin regulatory light chain 1 OS=Schizosaccharom... [more]
CDPKE_ARATH2.199e-1631.51Calcium-dependent protein kinase 14 OS=Arabidopsis... [more]
CANB_CRYNE2.199e-1635.66Calcineurin subunit B OS=Cryptococcus neoformans G... [more]
MLRB_PATYE2.872e-1632.17Myosin regulatory light chain B, smooth adductor m... [more]
CML21_ORYSJ2.872e-1637.25Probable calcium-binding protein CML21 OS=Oryza sa... [more]
MYL10_MOUSE6.399e-1633.81Myosin regulatory light chain 10 OS=Mus musculus G... [more]
MLRB_CHICK6.399e-1633.09Myosin regulatory light chain 2B, cardiac muscle i... [more]
CML35_ARATH6.399e-1634.69Probable calcium-binding protein CML35 OS=Arabidop... [more]
CANB_SCHPO6.399e-1634.21Calcineurin subunit B OS=Schizosaccharomyces pombe... [more]
CANB_NEUCR6.399e-1634.72Calcineurin subunit B OS=Neurospora crassa GN=cnb-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182055 ID=CN182055; Name=CN182055; organism=Citrus sinensis; type=EST; length=686bp
GAGGATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAAA
AAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAA
AGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCA
AGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCT
GAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTAT
TGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCG
ACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAG
AATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGG
GGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATG
TCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATG
GCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAAT
TGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAA
TTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCA
ATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTT
back to top