CN182055

Overview
NameCN182055
Unique NameCN182055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 48/143 (33.57%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   93 EFKEAFSLFDKDGDGCITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEE---LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE---MIREADVDGDGQINYEEFVKVMM 500
            E    F+ FD DGDG I+  EL   M++ LG+  ++ E   ++  VDADG+G +   EF+ L+     + + E     L+EAF +++ +  G I+   LR ++  LG   +D+++D+   MI   D++GDG ++++EF K+MM
Sbjct:   11 ESSALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLG---SDQDIDDCRAMICRFDLNGDGVLSFDEF-KIMM 149          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB_YEAST (Calcineurin subunit B OS=Saccharomyces cerevisiae GN=CNB1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   81 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEF 485
            D+I   ++ F   D+D  G I   E  ++   +  NP    + ++    DAD +G +DF EF+  ++        +E+L+ AF+++D D++GFIS  EL  V+     +NL ++   + VD  I E D DGDG++++EEF
Sbjct:   21 DEIERLRKRFMKLDRDSSGSIDKNEFMSIP-GVSSNPLAGRIMEVF---DADNSGDVDFQEFITGLSIFSGRGSKDEKLRFAFKIYDIDKDGFISNGELFIVLKIMVGSNLDDEQLQQIVDRTIVENDSDGDGRLSFEEF 156          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAFK (Calcium-dependent protein kinase 1 OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CPK1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 52/151 (34.44%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   75 TDDQISEFKEAFSLFDKDGDGCITTKEL---GTVMRS----LGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHV--MTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            T ++  E  + F   DK+GDG +  KEL     ++RS    LG+    E E+ +++ EVD D NG I++ EF+++   K +   SEE L++AF +FD D++G I+  EL ++  +T++ E++     +E++ EAD + D  I+++EFV +M
Sbjct:  370 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNILRSFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRDAFNLFDTDKSGKITKEELANLFGLTSISEQMW----NEVLGEADKNKDNMIDFDEFVNMM 515          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAF7 (Calcium-dependent protein kinase 1 OS=Plasmodium falciparum (isolate 3D7) GN=CPK1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 52/151 (34.44%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   75 TDDQISEFKEAFSLFDKDGDGCITTKEL---GTVMRS----LGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHV--MTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            T ++  E  + F   DK+GDG +  KEL     ++RS    LG+    E E+ +++ EVD D NG I++ EF+++   K +   SEE L++AF +FD D++G I+  EL ++  +T++ E++     +E++ EAD + D  I+++EFV +M
Sbjct:  370 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNILRSFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRDAFNLFDTDKSGKITKEELANLFGLTSISEQMW----NEVLGEADKNKDNMIDFDEFVNMM 515          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CANB2_HUMAN (Calcineurin subunit B type 2 OS=Homo sapiens GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 3
Query:   60 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTD----EEVDEMIREADVDGDGQINYEEFVKVM 497
            M     +D+I      F   D D  G ++ +E  + +  L  NP    ++ +I+  D DG+G +DF EF+   ++     D E++L+ AF ++D D++G+IS  EL  V+  + G  LTD    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   11 MCSHFDNDEIKRLGRRFKKLDLDKSGSLSVEEFMS-LPELRHNPL---VRRVIDVFDTDGDGEVDFKEFILGTSQFSVKGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMVGNNLTDWQLQQLVDKTIIILDKDGDGKISFEEFSAVV 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CABP3_HUMAN (Calcium-binding protein 3 OS=Homo sapiens GN=CABP3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  222 EVDADGNGTIDFPEFLNLMARKMKDTDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            E+  +  G +DF +F+ LM  K+    +     +E+++AF+ FD + +G I+ AEL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:   94 EIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLAELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 190          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CML30_ORYSJ (Probable calcium-binding protein CML30 OS=Oryza sativa subsp. japonica GN=CML30 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 58/164 (35.37%), Postives = 82/164 (50.00%), Query Frame = 3
Query:  108 FSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLM-------------------------ARKMKDTDSEEE---LKEAFRVFDKDQNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 497
            FS FD DGDG IT  EL   ++ LG    + AE   ++  VDA+ +G ID  EF  L                          A   ++ ++EEE   L+EAF VFD +++G ISA EL  V+ +L     G +    E  +MIR  D DGDG +++EEF ++M
Sbjct:   68 FSTFDHDGDGFITAAELEESLKRLGIAVSSAAEAAALVARVDANSDGLIDIHEFRELYDSIPKRRKSHQQHPLPSTAAADEEAAAADEEYEAEEEERDLREAFDVFDGNKDGLISAEELGTVLESLGLRQHGGRPAVAECRDMIRLVDSDGDGMVSFEEFKRMM 231          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CABP8_HUMAN (Calcium-binding protein 8 OS=Homo sapiens GN=CALN1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 40/125 (32.00%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   81 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 437
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   I+  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CABP8_RAT (Calcium-binding protein 8 OS=Rattus norvegicus GN=Caln1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 39/125 (31.20%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   81 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 437
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of CN182055 vs. ExPASy Swiss-Prot
Match: CABP8_MOUSE (Calcium-binding protein 8 OS=Mus musculus GN=Caln1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 39/125 (31.20%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   81 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 437
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
The following BLAST results are available for this feature:
BLAST of CN182055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CML31_ORYSJ3.511e-1433.57Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CANB_YEAST3.511e-1432.14Calcineurin subunit B OS=Saccharomyces cerevisiae ... [more]
CDPK1_PLAFK4.586e-1434.44Calcium-dependent protein kinase 1 OS=Plasmodium f... [more]
CDPK1_PLAF74.586e-1434.44Calcium-dependent protein kinase 1 OS=Plasmodium f... [more]
CANB2_HUMAN4.586e-1433.11Calcineurin subunit B type 2 OS=Homo sapiens GN=PP... [more]
CABP3_HUMAN4.586e-1441.24Calcium-binding protein 3 OS=Homo sapiens GN=CABP3... [more]
CML30_ORYSJ5.989e-1435.37Probable calcium-binding protein CML30 OS=Oryza sa... [more]
CABP8_HUMAN5.989e-1432.00Calcium-binding protein 8 OS=Homo sapiens GN=CALN1... [more]
CABP8_RAT7.822e-1431.20Calcium-binding protein 8 OS=Rattus norvegicus GN=... [more]
CABP8_MOUSE7.822e-1431.20Calcium-binding protein 8 OS=Mus musculus GN=Caln1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001O05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182055 ID=CN182055; Name=CN182055; organism=Citrus sinensis; type=EST; length=686bp
GAGGATTTGATTTTGCGGGGAAAAAAAAAACCTAGTTTTCGGTGTAAAAA
AAGAAGAAAATGGCGGATCAGCTCACCGACGATCAGATCTCCGAGTTTAA
AGAAGCCTTCAGCTTGTTCGACAAGGACGGCGACGGTTGCATTACCACCA
AGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGCT
GAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTAT
TGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCG
ACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAG
AATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGATGACAAACCTTGG
GGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATAAGGGAAGCTGATG
TCGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATG
GCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGGAAAAAGAAGAAAT
TGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTTTTATAAATTTTAA
TTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTTGTCTCCTGCTTCA
ATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTT
back to top