CN182049

Overview
NameCN182049
Unique NameCN182049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 103/215 (47.91%), Postives = 136/215 (63.26%), Query Frame = 2
Query:   11 AQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +QR+G GS V+   +H R+G A++R  D  E+ G + G + +I+HDPGR AP+A+V +        ++ L +  EG+  G  + CG  A +  GN+LP+ +IPEG  V N+E   GD G L RA G YA I++H  D + T VKLPSG  K + S CRA IG VAGGGR EKP +KAG  YH  + K   WP+VRGVAMN V+HP GGG HQH G
Sbjct:    7 SQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYE-----TGEEGLLVVPEGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTH--DGERTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 102/215 (47.44%), Postives = 137/215 (63.72%), Query Frame = 2
Query:   11 AQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +Q +G G+  ++S +H RKG  ++RS D  E+ G + G V +++HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G
Sbjct:    7 SQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 102/215 (47.44%), Postives = 137/215 (63.72%), Query Frame = 2
Query:   11 AQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +Q +G G+  ++S +H RKG  ++RS D  E+ G + G V +++HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L RA G YA +++H  D   T VKLPSG  K++   CRA IG VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G
Sbjct:    7 SQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANG-----EERLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 103/215 (47.91%), Postives = 134/215 (62.33%), Query Frame = 2
Query:   11 AQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +QR+G G+  ++S +H  KG  ++R+ D  E  G LKG V +I+HDPGR AP+ARV F +      ++ L +A E +   + V CG KA +  GN LP+  IPEG  + N+E+  GD G L R+SG YA +I+H  D D   ++LPSG  K +   CRA +G VAGGGR EKP LKAG  YH  R K      VRGVAMN V+HPHGGGN QH G
Sbjct:    7 SQRRGRGTPTYRSASHRFKGKIKYRAYDSIESEGSLKGKVVDIMHDPGRTAPVARVKFENG-----EERLILAPEALMLNEEVECGVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITH--DADKAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQHPG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47
Identity = 99/217 (45.62%), Postives = 132/217 (60.83%), Query Frame = 2
Query:    5 IRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +++Q +G G+  + S TH RKG  ++R  D  ER   + G + +I+HDPGR +P+ARV + +      ++ L +  EGM     + CG  A +  GNVLP+  +PEG  V N+E   GD G L R+ G YA +I+H  D   T +KLPSG  K +   CRA IG VAGGGR EKP+ KAG  YH  + K   WP+VRGVAMN V+HP GGGN QH G
Sbjct:    5 LQSQNRGKGTPRYTSPTHKRKGAVKYRKFDESERKDKIIGTIIDILHDPGRSSPIARVRYDNG-----EERLILIPEGMKIKDTIECGISAEIKPGNVLPLGEVPEGIPVYNIETIPGDGGKLVRSGGCYAHVITH--DVSKTIIKLPSGHMKTLNPMCRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.473e-47
Identity = 100/214 (46.73%), Postives = 132/214 (61.68%), Query Frame = 2
Query:   14 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            QR+G G+  ++S +H  +G   +RS D  ER G L G+V +IIHDPGR AP+A V F +      +++L +A E +     + CG  A++  GN LP+  IPEG  V N+E++ GD G   R+SG YA +I+H  D D T +++PSG  K      RA +G VAGGGR EKP LKAGN YH  + K      VRGVAMN V+HPHGGGN QH G
Sbjct:    8 QRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNG-----EEKLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPG 214          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.473e-47
Identity = 105/214 (49.07%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   14 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            QR+G  S VFK+  H    PA++  LD  +     K VV +++HDPGR  PLA+V       +        A EGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G   RASG YAVI+        T+V+LPSG    +P+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G
Sbjct:    8 QRRGKASPVFKTPDHIHVAPARYPLLDPSKT---YKAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGRA--GGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVG 211          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.473e-47
Identity = 104/217 (47.93%), Postives = 130/217 (59.91%), Query Frame = 2
Query:    5 IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            +R QR G G+  ++S  H   GPA++  L        L+G V E+IHDPGR  PLARV       +     L  AAEGMY GQ +  G  A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++        T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+HP GGG HQH G
Sbjct:    5 LRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQHKG 210          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 101/210 (48.10%), Postives = 129/210 (61.43%), Query Frame = 2
Query:   14 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNH 640
            QR+G GS  FKS +H  +G  ++  L++ +    L+GVV EI+HDPGR AP+ARV F +       ++L IA EG+  GQ +Y G  A + VGN LP+  IPEG  V N+E   GD G   RA G YA+++S  PD     V+LPSG  K     CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H
Sbjct:    8 QRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKT-LRGVVEEIMHDPGRTAPVARVKFENGI-----EKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDK--VIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH 209          
BLAST of CN182049 vs. ExPASy Swiss-Prot
Match: RL2_HALSA (50S ribosomal protein L2P OS=Halobacterium salinarium GN=rpl2p PE=3 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 101/217 (46.54%), Postives = 129/217 (59.45%), Query Frame = 2
Query:    5 IRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 652
            I+ QR+G G S F++ +H  K     +     E    L G V ++ HDP R AP+ARV F         + L +A+EG+  G  +  G  AT+  GN LP+  IPEG  VCNVE H GD G  ARA G  A +++H  + D T V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G
Sbjct:    5 IQGQRRGRGTSTFRAPSHRYKAELSHKRT---EDTDVLAGEVIDVEHDPARSAPVARVAFEDD-----DQRLVLASEGVGVGDTIEIGISATIEEGNTLPLAEIPEGVPVCNVESHPGDGGKFARAGGVNADLVTH--ERDATIVELPSGETKRLSPDCRATIGVVAGGGRTEKPFVKAGNKHHKMKARGTKWPRVRGVAMNAVDHPFGGGGRQHPG 211          
The following BLAST results are available for this feature:
BLAST of CN182049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METJA2.814e-5047.9150S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_METVS3.675e-5047.4450S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA3.675e-5047.4450S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METTH1.544e-4847.9150S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_META31.307e-4745.6250S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_METST8.473e-4746.7350S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_DESK18.473e-4749.0750S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_AERPE8.473e-4747.9350S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_PYRFU1.445e-4648.1050S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_HALSA2.465e-4646.5450S ribosomal protein L2P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182049 ID=CN182049; Name=CN182049; organism=Citrus sinensis; type=EST; length=657bp
TGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACA
CCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAG
CGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGG
TCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTACA
TGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCAG
TTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGCC
CGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCATG
TTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTATC
ATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTGG
TGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGTTG
CCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATAC
CACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGC
CATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTG
GTCATGC
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