CN182048

Overview
NameCN182048
Unique NameCN182048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12817 contig Csv1_Contig12817:3..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.820e-17
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD +  P  MK LS  +LE+LA E+R+++++ V++TGGHL ++LGVVELT+ALH VFNTP DK+
Sbjct:    7 RPETPLLDRVCCPADMKALSDAELERLADEVRSEVISVVAETGGHLGSSLGVVELTVALHAVFNTPTDKL 76          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.152e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLDT++YP  ++ L    L QL+ ELRA+++++V  TGGHL + LGVVELT A+H VFNTP+D++
Sbjct:    4 RPDTPLLDTVSYPEDLRKLEPGQLRQLSDELRAEMISAVGVTGGHLGSGLGVVELTAAIHYVFNTPEDRL 73          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  277 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +   E+P TPLLD  + P  ++ L++ DLE LA ELR D++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQDLLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 38/65 (58.46%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  307 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            LL++IN P  ++ L +++L +LA +LRA ++NSV++TGGHLS+NLGVVELT+ALH VFNTP+D++
Sbjct:    4 LLESINSPEDLRRLDRKELHELARQLRAFLINSVAQTGGHLSSNLGVVELTIALHYVFNTPEDRV 68          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CN182048 vs. ExPASy Swiss-Prot
Match: DXS_BRUAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  292 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 501
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
The following BLAST results are available for this feature:
BLAST of CN182048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS1_RHOS48.820e-1757.141-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_ERYLH1.152e-1654.291-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_PSEE41.504e-1652.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_METFK1.504e-1658.461-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_BRUSU1.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI1.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUME1.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB1.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC21.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUAB1.504e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182048 ID=CN182048; Name=CN182048; organism=Citrus sinensis; type=EST; length=503bp
AGAGGCACAGCTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCA
TCTCGCGCTCACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTT
CCGGGATTGCTATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTT
TCACAACCAAGCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTC
CGCTGAGAAGAATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGA
GGAAACAAAAAGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCA
ACACCATTGTTGGACACGATTAATTACCCAATTCATATGAAGAATCTCTC
TAAAGAGGATCTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTA
ACAGTGTATCGAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTG
GAGCTAACACTTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAAT
TAT
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