CN182042

Overview
NameCN182042
Unique NameCN182042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  291 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +++ NL  S D   L E F  FGT+LS +V+ +  TG S+G G++      SA+ AI  L+G  +  +++ V   I    R R+       P   F       +YV NL   +  ++LR  FG+FG + SA V+ D+ G  +R FGF+
Sbjct:  138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG-NSRCFGFV 274          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  249 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            S VEE   RA+   +Y+ N+      +E  ++ KPFG  +SV +SR+ E G+S+G G++   +  SA+ A+  L+  +V G+++    +       R AE   S  +K    E+      LYV NL      + LR  F  FGT+ S++V+ D  G  +R FGF+
Sbjct:  217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFV 375          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  291 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734
            +Y+ N     D   L E+F  FG  LSV+V  + +TG SRG G++  G+   A+ A+  ++G +V GR +   R +  I+     +     I   ++I  Y+  + LYV NL   +  + LR  F  +GT+ SA+V+   +G  ++ FGF+
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFV 338          
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  240 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 716
            D  S  EE   +A    +YV N+ +     E  ++F+ FG + S  ++R+ E+G SRG G++   S ++A  A+ AL+  D  G+++ V  +   + R           +  K   Y+  + LY+ NLS  +  E LR  F  +GT+ SA+V+ D   ++T
Sbjct:  223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST 380          
The following BLAST results are available for this feature:
BLAST of CN182042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PABP3_ARATH1.406e-1133.11Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_CRYNE2.398e-1132.12Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR5.342e-1131.13Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_COCIM9.112e-1129.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182042 ID=CN182042; Name=CN182042; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTTCTTAACAACTTCTTCCTCTCTGTTCACAAAAATTACTCCTCCA
GCTACACCAAAACGATTCGGTTTTACCTCTCTGCCAACTTTAATTAATTT
CCAGTACCCAAAGCTCTCATCTTGCTGGTCCCGCTCTCACCCAGCTGGGT
TTCGCTCAGTTCTTGCGGTGGTAGATGAGGAAGCGGTAGTAGTTGAAGAT
GAGATTAACGGCAAGGATAATGTTGGTGGAAACGAAGTGGACGACGACAG
TTCAGTCGAAGAGCCAAGGAGCCGCGCAAGGCCCTGTGAGTTATACGTGT
GTAACTTGCCCAGGAGCTTTGACATTTCAGAGCTTCTTGAGATGTTCAAG
CCTTTTGGAACCGTTCTTTCCGTTGAGGTTTCGAGGAATCCCGAAACAGG
CATAAGTCGTGGATGCGGTTACCTGACAATGGGTTCGATCAATTCAGCAA
AAAATGCAATTATTGCATTGGACGGATCTGATGTGGGTGGACGTGAAATG
CGGGTGAGATTTTCAATTGATATGAATTCGCGGACTAGGAATGCTGAGGC
ATTGATTTCACCACCAAAGAAGATTTTTGTCTATGAAAGCCCTCATAAAT
TATATGTTGGCAATCTTTCCTGGGCTGTAAAACCTGAGGATTTGAGAAAT
CATTTTGGCCGGTTTGGGACTGTGGTCAGTGCTAGAGTGTTGCACGATCG
TAAAGGACAAACCACCCGAGTTTTTGGGTTTATTTC
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