CN182042
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11 Identity = 49/148 (33.11%), Postives = 76/148 (51.35%), Query Frame = 3 Query: 291 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734 +++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L+G + +++ V I R R+ P F +YV NL + ++LR FG+FG + SA V+ D+ G +R FGF+ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG-NSRCFGFV 274
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11 Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 3 Query: 249 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734 S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++ + SA+ A+ L+ +V G+++ + R AE S +K E+ LYV NL + LR F FGT+ S++V+ D G +R FGF+ Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFV 375
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11 Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = 3 Query: 291 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 734 +Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ ++G +V GR + R + I+ + I ++I Y+ + LYV NL + + LR F +GT+ SA+V+ +G ++ FGF+ Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFV 338
BLAST of CN182042 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11 Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 3 Query: 240 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 716 D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G++ S ++A A+ AL+ D G+++ V + + R + K Y+ + LY+ NLS + E LR F +GT+ SA+V+ D ++T Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST 380 The following BLAST results are available for this feature:
BLAST of CN182042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182042 ID=CN182042; Name=CN182042; organism=Citrus sinensis; type=EST; length=736bpback to top |