CN182041

Overview
NameCN182041
Unique NameCN182041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VTC1B_DANRE (V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.043e-21
Identity = 51/149 (34.23%), Postives = 87/149 (58.39%), Query Frame = -1
Query:  352 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWKSEXXXXXXXXXXXXXDSHPYVSFTINL 798
            VTLF +  D+F+  ARE  F +RDF Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L++L  + +S+    +             + +PYV + I++
Sbjct:  227 VTLFTKAIDDFKQQARENKFMVRDFLYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSETFIAWIHIKALRVFTESVLRYGLPVNFQAMLLQPNKKNVKKLREVLKDLYKHLDSSAAVIDGSVDIPGLNLSQQEYYPYVYYKIDV 375          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC1_XENTR (V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 48/119 (40.34%), Postives = 77/119 (64.71%), Query Frame = -1
Query:  442 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 798
            VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  227 VTLFRKAVDDFRHKARENKFVVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYDLYKHLDSS 345          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_CAEBR (V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.282e-20
Identity = 47/112 (41.96%), Postives = 74/112 (66.07%), Query Frame = -1
Query:  463 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEEL 798
            VTLF +V D F+  ARE  F +RDF Y  E  ++   E +KL+ +++   + L++W   ++GE+FS+++H  A+RVF ES+LRYGLP +F A V+ P+    KK+R  L++L
Sbjct:  230 VTLFKKVIDEFKNIARENKFIVRDFVYDEETLKAGRTERDKLLAEKQKQYAPLIRWLKINFGEIFSAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQSKKLRQELQKL 341          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 97.4413 bits (241), Expect = 9.510e-20
Identity = 46/115 (40.00%), Postives = 75/115 (65.22%), Query Frame = -1
Query:  454 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGN 798
            VTLF +VA+ F++ ARE+ F +RDF Y+ E   +   E+ KL+ D++     L++W   ++ E F + +H  A+RVF ES+LRYGLP +F A ++ P+ K  K++R +L +L G+
Sbjct:  676 VTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGH 790          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_CAEEL (V-type proton ATPase subunit C OS=Caenorhabditis elegans GN=vha-11 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.622e-19
Identity = 46/112 (41.07%), Postives = 74/112 (66.07%), Query Frame = -1
Query:  463 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEEL 798
            VTLF +V D F+  ARE  F +RDF Y  E  ++   E +KL+ +++   + L++W   ++GE+F++++H  A+RVF ES+LRYGLP +F A V+ P+   +KK+R  L +L
Sbjct:  229 VTLFKKVIDEFKNTARENKFIVRDFVYDEETLKAGRTERDKLMAEKQRQYAPLIRWLKINFGEIFAAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQQKKLRQELHKL 340          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_MANSE (V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.051e-18
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  463 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEEL 798
            VTLF +V D F++ ARE+ F +R+F Y+     +   E+ KL+ D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L PS +  +++R  L  L
Sbjct:  226 VTLFKKVVDEFKLHARERKFVVREFAYNEADLVAGKNEITKLLTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAALLVPSRRSARRLRDTLHAL 337          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_ASCSS (V-type proton ATPase subunit C 2 OS=Ascidia sydneiensis samea GN=VATC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.418e-17
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = -1
Query:  442 TLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 795
            ++F +V + F+       F +R+F ++ +    R  ++ K+  ++  +   LL+W   ++ EVF++W+H  A+RVF ES+LRYGLP +F A VL P  K  K++R +L  L    +ST
Sbjct:  229 SIFKKVYEEFKYNCSRYKFFVREFNFNEQDSVVRQDQINKIASEKRKMLGPLLRWLKVNFSEVFTAWIHIKALRVFVESVLRYGLPVNFQAVVLDPPKKNRKRLRDVLNNLYCKLDST 346          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_DICDI (V-type proton ATPase subunit C OS=Dictyostelium discoideum GN=vatC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.536e-17
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  472 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSIL 798
            V LF +  +NF+    EK + +RDF+          QE  KL  D+++ R+SL++WC  ++ E F +W+H   VRVF ES+LR+G+P +F A ++ P    +KKVR IL
Sbjct:  227 VILFKKFYENFKTKIIEKKWVVRDFKLEDNKP---TQERSKLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVFVESVLRFGIPFNFQAILMKPQKGADKKVRDIL 332          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_SCHPO (V-type proton ATPase subunit C OS=Schizosaccharomyces pombe GN=SPAPB2B4.05 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  472 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSIL 798
            V +F + AD+F   ARE  + IR+F +    +E+   E +     ++ + SSLL++   ++ E F  W+H   + V+ ESILRYGLPP F + +  P  K E K+++IL
Sbjct:  232 VVVFKKTADSFITKAREAKYTIREFTFEQGLRETEQSEFDDAAVKEKRMLSSLLRYASIAFSESFQGWIHLKCLCVYVESILRYGLPPDFSSVIFQPMAKSEVKIKNIL 340          
BLAST of CN182041 vs. ExPASy Swiss-Prot
Match: VATC_YEAST (V-type proton ATPase subunit C OS=Saccharomyces cerevisiae GN=VMA5 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 9.212e-15
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = -1
Query:  457 VTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCG 798
            V LF +    F  AAREK F  R+F YS E  +   +E +     ++SLR  L++   T+Y +VF +W H  A+RV+ ES+LRYGLPP F   ++A   K   K +S L +  G
Sbjct:  236 VHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFG 349          
The following BLAST results are available for this feature:
BLAST of CN182041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VTC1B_DANRE5.043e-2134.23V-type proton ATPase subunit C 1-B OS=Danio rerio ... [more]
VATC1_XENTR6.586e-2140.34V-type proton ATPase subunit C 1 OS=Xenopus tropic... [more]
VATC_CAEBR7.282e-2041.96V-type proton ATPase subunit C OS=Caenorhabditis b... [more]
VATC_DROME9.510e-2040.00V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC_CAEEL1.622e-1941.07V-type proton ATPase subunit C OS=Caenorhabditis e... [more]
VATC_MANSE1.051e-1839.29V-type proton ATPase subunit C OS=Manduca sexta PE... [more]
VATC_ASCSS4.418e-1733.90V-type proton ATPase subunit C 2 OS=Ascidia sydnei... [more]
VATC_DICDI7.536e-1739.45V-type proton ATPase subunit C OS=Dictyostelium di... [more]
VATC_SCHPO1.421e-1535.78V-type proton ATPase subunit C OS=Schizosaccharomy... [more]
VATC_YEAST9.212e-1539.47V-type proton ATPase subunit C OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182041 ID=CN182041; Name=CN182041; organism=Citrus sinensis; type=EST; length=798bp
CTTTTTTACAACATACAAAACTGCATCAATACTTGTTGATCATTGTAGGA
CAACAAATTTAATGTTCAAGAAGAGCATGAAAATTGAAACATAATAGATA
CAGAAAATAAAACCTCATAAATAATAACTTAAAATACAAATTTCAGATGG
CAAGATCTTCTCCACAAGCTTCCTCCATGAGACTGACCAGAACTATCCAA
GCTGAGATCATAAGTAAACAACAAAAGAATTGAGTTATTGATCCTAATAT
ACATATCTTCAACTCCAGCCCATTATTTATTTTAGTCCAGAGGAATACTT
GAGACTGAATTCTACCGGACATGGAACCGGGGGACTCAGCATCAATCAAA
CAAGATTGATTGTGAACGACACATAAGGATGAGAATCAGCATCCCCTCCC
AAACCCGCCATCATTCCGCCATCATCTTCGGATTTCCAGAATGTGCTGTT
CGCATTGCCGCACAGTTCTTCAAGAATTGAACGCACTTTTTTTTCACCCT
TCACGGAGGGAGCTAAAACACATGCCAAGAAAGATGGCGGCAAACCATAT
CTCAAAATGCTCTCTGCAAAGACACGTACAGCACAAAAATGCATCCAGGA
ACTAAAAACCTCGCCGTAACTGGTATAGCACCATTGCAAAAGAGAGCTTC
TCAAGCTTTCTTGGTCGTGAACTAATTTTTCCAACTCCTGATTACGACTT
TCTTGTGCTTCAGAACTATATTCAAAATCACGAATTTGGAAGCCCTTCTC
ACGTGCAGCTATTCTGAAATTGTCTGCAACACGTCCAAATAGTGTGAC
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