CN182040

Overview
NameCN182040
Unique NameCN182040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.042e-22
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            TC  ++I+  YFQLCSE+Y+WWWRS++T G              F K+  + L + +LYFGY +++S   F L G++GF+  F FV KIY+S+KID
Sbjct:  534 TCIMVSIITVYFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629

HSP 2 Score: 25.409 bits (54), Expect = 3.042e-22
Identity = 13/38 (34.21%), Postives = 18/38 (47.37%), Query Frame = -2 
Query:  547 SILIEGILPFGAVFIELFLHLDIYMAEPVLLHLWLPFY 660
            S +I G +PF  + IELF  LD     P+       F+
Sbjct:  489 SAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFF 526
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.025e-17
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            IT+ L YFQL  ED+ WWW S++  G              +    +  L+    YF YM+IV + FF+L GT+GFY+   FV++IY ++K D
Sbjct:  496 ITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587

HSP 2 Score: 28.8758 bits (63), Expect = 7.025e-17
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = -2 
Query:  607 ILIEGILPFGAVFIELF 657
            ILI G LPF A++IELF
Sbjct:  448 ILIAGFLPFSAIYIELF 464
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.661e-16
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            I+I L YFQL  EDY WWWRS L+ G                +  ++  V  + +FGY ++  Y FF++ GTI F++   F+R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

HSP 2 Score: 25.0238 bits (53), Expect = 9.661e-16
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y + V  + + G LPF A+ +EL+
Sbjct:  460 YKSTVIHMTVGGFLPFSAISVELY 483
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.661e-16
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            I+I L YFQL  EDY WWWRS L+ G                +  ++  V  + +FGY ++  Y FF++ GTI F++   F+R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

HSP 2 Score: 25.0238 bits (53), Expect = 9.661e-16
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y + V  + + G LPF A+ +EL+
Sbjct:  460 YKSTVIHMTVGGFLPFSAISVELY 483
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.661e-16
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            I+I L YFQL  EDY WWWRS L+ G                +  ++  V  + +FGY ++  Y FF++ GTI F++   F+R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

HSP 2 Score: 25.0238 bits (53), Expect = 9.661e-16
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y + V  + + G LPF A+ +EL+
Sbjct:  460 YKSTVIHMTVGGFLPFSAISVELY 483
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.755e-15
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            I+I L YFQL  EDY WWWRS L+ G                +  ++  V  + +FGY ++  Y FF++ GTI F++   F+R IY ++K+D
Sbjct:  515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606

HSP 2 Score: 23.483 bits (49), Expect = 2.755e-15
Identity = 8/24 (33.33%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y + +  + + G LPF A+ +EL+
Sbjct:  460 YKSTLVHMTVGGFLPFSAISVELY 483
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.757e-15
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            +TIV  YF L +EDY W W S+L+A               F K ++  L     YFGYM + S A  ++ G IG+     FVRKIY++VKID
Sbjct:  498 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589

HSP 2 Score: 31.5722 bits (70), Expect = 2.757e-15
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            +M P   + + GILPFG++FIE++
Sbjct:  443 FMEPAVIVCLGGILPFGSIFIEMY 466
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.757e-15
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            +TIV  YF L +EDY W W S+L+A               F K ++  L     YFGYM + S A  ++ G IG+     FVRKIY++VKID
Sbjct:  496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587

HSP 2 Score: 31.5722 bits (70), Expect = 2.757e-15
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            +M P   + + GILPFG++FIE++
Sbjct:  441 FMEPAVIVCLGGILPFGSIFIEMY 464
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.233e-14
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            T + +TI++ Y+ LC E++ W WRS++  G               TK ++  +++ +LY GY +I+S    V+TG IGF++  +F+RKIYS++K++
Sbjct:  578 TTSLVTILITYYSLCLENWLWQWRSFIIGGLGCSIYTFIHSILF-TKFKLGGVITVVLYLGYSLIISALCCVVTGAIGFFSSMFFIRKIYSAIKVE 672

HSP 2 Score: 23.483 bits (49), Expect = 2.233e-14
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y+    + LI GI  FG++ +EL+
Sbjct:  527 YLRTAQATLIAGIFSFGSIAVELY 550
[Close]
BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  237 ITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 512
            I+I L YFQL  EDY WWWRS L+ G                +  ++  V  + +FGY ++  Y FF++ GTI F++   F+R IY ++K+D
Sbjct:  498 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
The following BLAST results are available for this feature:
BLAST of CN182040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YON8_SCHPO3.042e-2243.75Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
PHG1B_DICDI7.025e-1738.04Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_PONAB9.661e-1636.96Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE9.661e-1636.96Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN9.661e-1636.96Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN2.755e-1536.96Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S3_HUMAN2.757e-1540.22Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE2.757e-1540.22Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TMN2_YEAST2.233e-1434.38Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]
TM9S1_RAT7.618e-1436.96Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182040 ID=CN182040; Name=CN182040; organism=Citrus sinensis; type=EST; length=679bp
GAGACAATCTAAACTTCTTGCATAGAAACTAATGGAAGTACACGTTTGAT
TTTTGTAGTGTAAACATAAGAACACATGCACATTGCTCATCCCTACTCTA
TTTCAAAATAAAAAACGGTTTTCAGGAAAATGGGAAATAAACTTCCCATG
GTGTAAATCTGCAGATACAGTCAATATGGTTCAGACTCTTTGCTTCATCT
ACTACTTGTCCAAGGATCTTCAAAATATCCAGATTAGTCAATTTTCACGG
AGGAATAGATCTTGCGTACAAACCAGAAGCATGCGTAAAAGCCAATTGTC
CCCGTCAAGACAAAGAAAGCATACGAAACAATTACCATGTACCCAAAGTA
AAGGATGCCCGAAACCAGCTTTGTAATTTCCAACTTGGTGAAGAAGTAGA
AAATTGAGTAGAGAAAAAGGTACAGAGCAGAGGAGCCAGCAGTCAGGTAA
GATCTCCACCACCAATGGTAGTCCTCACTACACAACTGAAAGTAGCAGAG
CACTATTGTTATCTCTGCGCAAGTGATTAGTAGTATAACAAACACGATAA
AAAGGAAGCCAAAGATGTAATAGAACTGGTTCAGCCATATAGATGTCAAG
ATGAAGAAAGAGCTCGATGAAGACAGCCCCAAATGGAAGAATGCCTTCAA
TGAGTATGGAGAATACTGGTGTCATGTAC
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