CN182040

Overview
NameCN182040
Unique NameCN182040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig32 contig Csv1_Contig32:44..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN182040 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.073e-13
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = -3 
Query:  237 TCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 524
            T + +TI++ Y  LC E++ W WR ++  G               TK ++    + +LY GY  ++S    ++TG+IGF +   FVRKIYSS+K+D
Sbjct:  573 TSSLVTILITYHSLCLENWKWQWRGFIIGGAGCALYVFIHSILF-TKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667

HSP 2 Score: 27.335 bits (59), Expect = 1.073e-13
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = -2 
Query:  607 YMTPVFSILIEGILPFGAVFIELF 678
            Y+  + + LI GI PFG++ +EL+
Sbjct:  522 YLKTIPATLIAGIFPFGSIAVELY 545
The following BLAST results are available for this feature:
BLAST of CN182040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TMN1_YEAST1.073e-1334.38Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182040 ID=CN182040; Name=CN182040; organism=Citrus sinensis; type=EST; length=679bp
GAGACAATCTAAACTTCTTGCATAGAAACTAATGGAAGTACACGTTTGAT
TTTTGTAGTGTAAACATAAGAACACATGCACATTGCTCATCCCTACTCTA
TTTCAAAATAAAAAACGGTTTTCAGGAAAATGGGAAATAAACTTCCCATG
GTGTAAATCTGCAGATACAGTCAATATGGTTCAGACTCTTTGCTTCATCT
ACTACTTGTCCAAGGATCTTCAAAATATCCAGATTAGTCAATTTTCACGG
AGGAATAGATCTTGCGTACAAACCAGAAGCATGCGTAAAAGCCAATTGTC
CCCGTCAAGACAAAGAAAGCATACGAAACAATTACCATGTACCCAAAGTA
AAGGATGCCCGAAACCAGCTTTGTAATTTCCAACTTGGTGAAGAAGTAGA
AAATTGAGTAGAGAAAAAGGTACAGAGCAGAGGAGCCAGCAGTCAGGTAA
GATCTCCACCACCAATGGTAGTCCTCACTACACAACTGAAAGTAGCAGAG
CACTATTGTTATCTCTGCGCAAGTGATTAGTAGTATAACAAACACGATAA
AAAGGAAGCCAAAGATGTAATAGAACTGGTTCAGCCATATAGATGTCAAG
ATGAAGAAAGAGCTCGATGAAGACAGCCCCAAATGGAAGAATGCCTTCAA
TGAGTATGGAGAATACTGGTGTCATGTAC
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