CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182036_ssr156 microsatellite CN182036_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2301 contig Csv1_Contig2301:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BORPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella parapertussis GN=metE PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 96/180 (53.33%), Postives = 123/180 (68.33%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQAS---RKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FA QK+ E+  L KAL G  D A     AA +A+   R+ SPR+ N AV +  A   G    RA     R+  QQ +L LP  PTTTIGSFPQT ++R +RR++K+  +++  Y   I++EI  V++ QE++ +DVLVHGEPERNDMVEYFGE L+GFAFT NGWVQSYGSRCVKPP
Sbjct:  353 WLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQARRQSPRIHNPAVAQRMAGQAGVSRERAP-FGQRIARQQSELRLPAFPTTTIGSFPQTAEIRALRRDWKSGALTDSAYENAIRKEIEEVIRFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BORBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella bronchiseptica GN=metE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 96/180 (53.33%), Postives = 123/180 (68.33%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQAS---RKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FA QK+ E+  L KAL G  D A     AA +A+   R+ SPR+ N AV +  A   G    RA     R+  QQ +L LP  PTTTIGSFPQT ++R +RR++K+  +++  Y   I++EI  V++ QE++ +DVLVHGEPERNDMVEYFGE L+GFAFT NGWVQSYGSRCVKPP
Sbjct:  353 WLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQARRQSPRIHNPAVAQRMAGQAGVSRERAP-FGQRIARQQSELRLPAFPTTTIGSFPQTAEIRALRRDWKSGALTDSAYENAIRKEIEEVIRFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.601e-46
Identity = 93/179 (51.96%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK+ E+ ALA+   G +D  EA F  +  A A+R  S  + + AVQ   A +  S   R +  S+R   Q++ L+LP LPTTTIGSFPQT D+RR+R ++K  +IS+D+Y   I+E+I + +  QEE+ +DVLVHGEPER DMVE+FG QL GF FT NGWVQSYG+RCV+PP
Sbjct:  355 WFAFATQKIEEIVALAERADGHEDATEALFEKSRRAHAARAESDWINDAAVQDRVAGIDASMTERDSPHSSRSPLQREALDLPTLPTTTIGSFPQTDDMRRMRAQYKKDEISKDEYEDFIEEQIADTIAAQEEIGLDVLVHGEPERGDMVEHFGRQLDGFLFTENGWVQSYGTRCVRPP 533          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURS3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia sp. (strain 383) GN=metE PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46
Identity = 97/179 (54.19%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA AL+  +D+     ++NAAA  SR+ SPRV N AV+ A A +      R +  + R   Q  +LNLP  PTTTIGSFPQT ++R+ R +FKA  + E  Y K ++ EI   V+ QE L++DVLVHGE ERNDMVEYFGEQL G+AF+  GWVQSYGSRCVKPP
Sbjct:  351 WLAFALQKLDELKVLATALNEGRDKVADALAANAAAIHSRRHSPRVNNPAVKAAIARIDAQLGNRVSPYTQRAPKQSARLNLPAFPTTTIGSFPQTGEIRQARSQFKAGTLDEAGYRKAMQAEIERSVREQESLELDVLVHGEAERNDMVEYFGEQLDGYAFSQFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURCM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metE PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA AL+  +D+     ++NAAA  SR+ SPRV N AV+ A A +      RA+  + R   Q  +LNLP  PTTTIGSFPQT D+R  R +FKA  + E  Y   ++ EI   V+ QE L +DVLVHGE ERNDMVEYFGEQL G+AF+  GWVQSYGSRCVKPP
Sbjct:  351 WLAFALQKLDELKVLATALNQGRDKVADALAANAAAIDSRRRSPRVNNPAVKAALARIDAQLGNRASPYTQRAPKQSARLNLPAFPTTTIGSFPQTADIRHARSQFKAGALDEAGYRAAMQAEIERSVREQESLGLDVLVHGEAERNDMVEYFGEQLDGYAFSQFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.731e-46
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY--FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA AL+  +D+     ++NAAA  SR+ SPRV N AV+ A A +      R +  + R   Q  +LNLP  PTTTIGSFPQT ++R+ R  FKA  + E  Y K ++ EI   V+ QE L++DVLVHGE ERNDMVEYFGEQL G+AF+  GWVQSYGSRCVKPP
Sbjct:  351 WLAFALQKLDELKVLATALNEGRDKVADALAANAAAIDSRRRSPRVNNPAVKAAIARIDARLGNRTSPYTQRASKQSARLNLPAFPTTTIGSFPQTAEIRQARSRFKAGALDEAGYRKAMQAEIERSVREQESLELDVLVHGEAERNDMVEYFGEQLDGYAFSQFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.567e-46
Identity = 100/184 (54.35%), Postives = 124/184 (67.39%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKAL-------SGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  + +AL        G+ D+     N  A ASR  S RV N  V+K  AA++ +D  RA    AR DAQQ +LNLP LPTTTIGSFPQT ++RR R + K   +   DY++ ++ EI +VV+ QE L +D+LVHGE ERNDMVEYFGE L G+AFT NGWVQSYGSRCVKPP
Sbjct:  346 WLAFARQKLDELAVIKRALVEGPAAVQGELDD-----NRIAIASRTQSRRVHNAGVKKRVAAIRAADAVRAAPYPARADAQQARLNLPLLPTTTIGSFPQTPEIRRARAQHKRGDLPALDYLQRMRTEIADVVRRQEALGLDMLVHGEAERNDMVEYFGELLWGYAFTANGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_MARAV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metE PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.567e-46
Identity = 95/179 (53.07%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA+AL+  +    A  + N  A  SR++S RVTN  V+KA A++      R +    R+  Q+++LNLP  PTTTIGSFPQT ++R+ R +F+  ++SE  Y++ ++ EI   V+ QE+L +DVLVHGEPERNDMVEYFGEQL G+AFT  GWVQSYGSRCVKPP
Sbjct:  346 WLAFAVQKLDELQILARALNEGRSSVRAELADNQLAIDSRRNSHRVTNPEVRKAVASVTPELGNRHSPYPQRIARQRERLNLPAFPTTTIGSFPQTREIRQARLQFRKGELSEQAYIEQMRAEIVRCVEAQEKLGLDVLVHGEPERNDMVEYFGEQLDGYAFTRFGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEAE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa GN=metE PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.659e-46
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE---AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LA+A +  +     A    + A QASR SSPR+   AVQ   AA+K SD +R +  + R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ FK  K+SE +Y++ +  EI + V++QE+L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  350 WLAFAVQKCREVAVLARAATEPEAAEVLAALEESRAVQASRASSPRIHKPAVQARLAAIKASDAQRRSPFAERIARQRAGLDLPAFPTTTIGSFPQTSSIRLARQSFKQGKLSEAEYIEAMHSEIRHAVQIQEQLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKP 528          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEAB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metE PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.659e-46
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE---AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LA+A +  +     A    + A QASR SSPR+   AVQ   AA+K SD +R +  + R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ FK  K+SE +Y++ +  EI + V++QE+L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  350 WLAFAVQKCREVAVLARAATEPEAAEVLAALEESRAVQASRASSPRIHKPAVQARLAAIKASDAQRRSPFAERIARQRAGLDLPAFPTTTIGSFPQTSSIRLARQSFKQGKLSEAEYIEAMHSEIRHAVQIQEQLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKP 528          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_BORPA7.188e-4753.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORBR7.188e-4753.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD1.601e-4651.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURS32.731e-4654.195-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCM2.731e-4654.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC2.731e-4654.195-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ3.567e-4654.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MARAV3.567e-4653.075-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAE4.659e-4653.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEAB4.659e-4653.635-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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