CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURXL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=metE PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.832e-42
Identity = 94/179 (52.51%), Postives = 120/179 (67.04%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALS--GQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA +K+ EV  LA AL      + A  +++ A +A R+SS  V N  VQK  AA+  +   R +  + R   Q++ L LP LPTTTIGSFPQT  +R+ R  +K  ++   DY++ ++ EI   V+ QEEL +DVLVHGE ERNDMVEYFGEQL G+AFT NGWVQSYGSRCVKPP
Sbjct:  343 WLAFATEKLAEVATLALALRDPAAAEPALAATDRALEARRRSSA-VVNALVQKRVAAVSSAMAERQSPFAERNRLQREALGLPLLPTTTIGSFPQTAAIRQARAAYKRGELRALDYLQRMRTEIEIAVRKQEELGLDVLVHGEAERNDMVEYFGEQLWGYAFTENGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_RHOPT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.393e-42
Identity = 89/179 (49.72%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+F+ QK+ E++ L+ ALSG +   +   S++A A A+R+ SP+V + AV   AAA+  +  +R +  +AR   Q ++L LP  PTTTIGSFPQT  +R+ R       IS+ DY   ++ E    ++ QE++ +DVLVHGE ERNDMV+YFGEQLSGFAFT  GWVQSYGSRCV+PP
Sbjct:  374 WLSFSLQKMGELSTLSGALSGDRAAVQDQLSASAKAAATRRKSPKVHDMAVSSRAAAVTPAMTQRNSGFAARATLQHQRLQLPAFPTTTIGSFPQTAQIRQARAAHAKGAISDADYNTFLRGETARAIQWQEKVGLDVLVHGEFERNDMVQYFGEQLSGFAFTKEGWVQSYGSRCVRPP 552          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSESM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas syringae pv. tomato GN=metE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.125e-42
Identity = 90/179 (50.28%), Postives = 117/179 (65.36%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAA---QASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  E+  L+ AL+  +      + A +   QASR  S RV N  VQ   A++  +DH+R +  + R+  Q+++L LP  PTTTIGSFPQT  +R  R+  K  K+S +DY   ++ EI + V++QE L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  355 WLAFAVQKSREIAILSHALNDPEATEVVEALAQSCEIQASRAQSSRVHNPQVQARLASVTAADHQRRSAFAERITVQRERLKLPAFPTTTIGSFPQTSAIRLARQAHKQGKLSLNDYTDAMRHEIRHAVQVQENLGLDVLVHGEAERNDMVEYFAEQLDGYLFTRFGWVQSYGSRCVKP 533          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEA7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=metE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.125e-42
Identity = 90/179 (50.28%), Postives = 116/179 (64.80%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKAL---SGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LA+AL      +    F  +   +ASR+ S R+    VQ   AA++  D RRA+  + R   Q+ +L LP  PTTTIGSFPQT  +R  R+ +K  ++S+ +Y + +  EI + V++QE L +DVLVHGE ERNDMVEYF EQL G+AFT  GWVQSYGSRCVKP
Sbjct:  348 WLAFAVQKCEEVAILARALVEPEAPEVRQAFEVSRRVEASRRRSTRIHKREVQARLAAVRPQDSRRASAFAERAVQQRARLELPAFPTTTIGSFPQTSAIRLARQSWKQGRLSQAEYTEAMHSEIRHAVQVQERLGLDVLVHGEAERNDMVEYFAEQLDGYAFTRFGWVQSYGSRCVKP 526          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ENT38 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Enterobacter sp. (strain 638) GN=metE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.125e-42
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+          +A  QA R+ S RV N AV+K  AA+   D +R      R +AQ+ + NLP  PTTTIGSFPQT ++R +R +FK   +  ++Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCEELALLRDALNSGDTAKLVEWSAPIQA-RRHSTRVHNAAVEKRLAAITAKDSQRENAYEVRAEAQRARFNLPAWPTTTIGSFPQTTEIRGLRLDFKKGNLDANNYRTGIAEHIKQAIIEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ACTPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=metE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.125e-42
Identity = 94/180 (52.22%), Postives = 116/180 (64.44%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD---EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QKV E+  L +AL+  +    E    S  AA A R +S  +    + +  A L  +  +R +  + R+  Q K LNLP LPTT IGSFPQT+++R  R  FK  ++S  DY   +K+EI  VV+ QEELD+DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  343 WLAFTLQKVAELQVLKQALNAGRSAVAEQLNDSQTAADA-RANSNVIHKAEIAQRLANLPANADKRQSPFAERIKLQNKWLNLPLLPTTNIGSFPQTLEIRHARAAFKKGELSLADYEAAMKKEIEFVVRKQEELDLDVLVHGEAERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ACTP7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=metE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.125e-42
Identity = 95/180 (52.78%), Postives = 115/180 (63.89%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD---EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QKV E+  L +AL+  +    E    S  AA A   S+     E  Q+ A     +D R++   + R+  Q K LNLP LPTT IGSFPQT+++R  R  FK  ++S  DY   +K+EI  VV+ QEELD+DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  343 WLAFTLQKVAELQVLKQALNAGRSAVAEQLNDSQTAADARANSNVIHKAEVAQRLANLPTNADKRQSP-FAERIKLQNKWLNLPLLPTTNIGSFPQTLEIRHARAAFKKGELSLADYEAAMKKEIEFVVRKQEELDLDVLVHGEAERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SHIDS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metE PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.082e-42
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L   L+     A    +A  QA R+ S RV N AV+K  AA+   D +RA     R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  ++Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCHELALLRDVLNSGDTAALAEWSAPIQA-RRHSTRVHNPAVEKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIRQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SERP5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Serratia proteamaculans (strain 568) GN=metE PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.331e-42
Identity = 89/179 (49.72%), Postives = 114/179 (63.69%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALS--GQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L+ AL+  G   +A   + +A   +R+ S RV N  V +  AA+   D  R    + R  AQ+++ NLP  PTTTIGSFPQT ++R +R +FK  ++  ++Y  +I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCGELALLSAALNAPGAAKQAELDAYSAPIRARRQSSRVHNAQVGQRLAAITAQDSERQRPYAERAQAQRERFNLPAWPTTTIGSFPQTTEIRGLRLDFKQGRLDGNNYRTSISEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGENLDGFVFTQNGWVQSYGSRCVKPP 523          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PARL1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=metE PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.331e-42
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA +K+ E+  LA+ +   +       + NAA   +R++SPR+ N AV+     +     RR    + R   QQK+  LP LPTTTIGSFPQT D+R+ R   +    +E  Y   +K EI   ++LQE + +DVLVHGEPER DMVEYFGE+L GFAFT  GWVQSYGSRCVKPP
Sbjct:  349 WLAFAEEKLGELAVLARGVKEGRTSISTELAENAALFEARRNSPRIHNPAVRARVRDIDPHADRRGRPFADRQSIQQKRFGLPKLPTTTIGSFPQTSDVRKARASLRRGDWNEAQYDAFMKAEIEKTIRLQERIGLDVLVHGEPERTDMVEYFGEKLEGFAFTSLGWVQSYGSRCVKPP 527          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_BURXL1.832e-4252.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPT2.393e-4249.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSESM3.125e-4250.285-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEA73.125e-4250.285-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ENT383.125e-4251.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTPJ3.125e-4252.225-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTP73.125e-4252.785-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIDS4.082e-4251.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SERP55.331e-4249.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PARL15.331e-4249.165-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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