CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_HAES2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus somnus (strain 2336) GN=metE PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.093e-42
Identity = 93/180 (51.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYF---SSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF  QKV E++ L  AL   ++       +S  AA A   S      E  ++ A   K +D R++     R+  Q   LNLP LPTT+IGSFPQT ++RR R  FK   +S ++Y  ++K+EI  VV+ QE+LD+DVLVHGEPERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  344 WLAFTLQKVQELSVLKTALEKGRNAVNVELDASQVAADARANSKEIHRPEVAERLANLPKNADQRKSP-FGERIKLQNAWLNLPLLPTTSIGSFPQTTEIRRARAAFKKGDLSLEEYENSMKKEIELVVREQEKLDLDVLVHGEPERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ALCBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metE PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.093e-42
Identity = 89/178 (50.00%), Postives = 116/178 (65.17%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD-EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FA QK+ E+  L  AL G  +  +   +  AA  +R  S R+ N AV +  A        R +  + R+  QQ  L LP  PTTTIGSFPQT ++R  RR++KA K+++  Y + ++EEI   ++ QEE+++DVLVHGE ERNDMVEYFGE L GFAFT  GWVQSYGSRCVKPP
Sbjct:  352 WLSFAKQKLEELALLGGALRGNSNVNSGLQTQRAALQARGLSSRIHNPAVAQRLADASQLSRDRVSPFAERIAQQQHALQLPAFPTTTIGSFPQTREIRTARRDWKAGKLNDAQYQQQMQEEIARCIRYQEEVELDVLVHGEAERNDMVEYFGELLDGFAFTRFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SALTY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhimurium GN=metE PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.188e-41
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+  +  A    +A  QA R+ S RV N AV+K  AA+   D +R      R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  + Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCGELALLRDALNSGETAALEEWSAPIQA-RRHSRRVHNAAVEKRLAAITAQDSQRENPYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRGLRLDFKKGNLDANHYRTGIAEHIKQAIIEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_SALHS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella heidelberg (strain SL476) GN=metE PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.188e-41
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+  +  A    +A  QA R+ S RV N AV+K  AA+   D +R      R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  + Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCGELALLRDALNSGETAALEEWSAPIQA-RRHSRRVHNAAVEKRLAAITAQDSQRENPYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRGLRLDFKKGNLDANHYRTGIAEHIKQAIIEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ECOL5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=metE PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.188e-41
Identity = 90/177 (50.85%), Postives = 109/177 (61.58%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L   L+     A    +A  QA R+ S RV N AV+K  AA+   D +R      R +AQ+ +  LP  PTTTIGSFPQT ++R +R +FK   +  ++Y   I E I   +  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFALQKCHELALLRDVLNSGDTAALAEWSAPIQA-RRHSTRVHNPAVEKRLAAITAQDSQRTNVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKGNLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NITWN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=metE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 88/179 (49.16%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALS-GQKDEA-YFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF+ QK+ E+  L +AL+ G+   A    ++A A A+RK+SP+V +  V+   AA+     RR +  + R   Q+++  LP  PTTTIGSFPQT ++R+ R       +S+ DY K ++EE    ++ QE++ +DVLVHGE ERNDMV+YFGEQLSGFAFT +GWVQSYGSRCV+PP
Sbjct:  362 WLAFSVQKMGELATLGEALAKGRASVADALKASADAAAARKASPKVHDAKVEGRIAAVTSDMARRKSAFAERAKLQRERFGLPPFPTTTIGSFPQTAEVRKARSAHAKGTLSDTDYEKFLQEETARTIRWQEDIGLDVLVHGEFERNDMVQYFGEQLSGFAFTRHGWVQSYGSRCVRPP 540          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_COXBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 92/179 (51.40%), Postives = 114/179 (63.69%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE--AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QKV E   L + L   ++   A    N     SRK+S R+ N  V+K AA++     RR    S R + Q  +LNLP  PTTTIGSFPQT  +R +RR++K  KI +  Y + I++EI  V+ +Q +L +DVLVHGE ERNDMVEYFGE L G A T NGWVQSYGSRCVKPP
Sbjct:  346 WFAFAKQKVAEAAFLTRGLREGRESIGAELKKNEEVIISRKTSKRIHNPNVEKKAASVTERLMRRQHEHSIRKNKQTAQLNLPLFPTTTIGSFPQTSQIRCLRRDYKQGKIDDALYEEKIRQEIAEVIGIQVKLGLDVLVHGELERNDMVEYFGELLDGIAITSNGWVQSYGSRCVKPP 524          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 85/178 (47.75%), Postives = 119/178 (66.85%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY-FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF+ QK+ E+  LA+ L+G ++     + +  A  +R++SP++ N  V     A+  +  +RAT  + R + Q+++  LP  PTTTIGSFPQT  +R  R       +SE+ Y + +KEEI   V+ QE++ +DVLVHGE ERNDMV+YF EQL+GFAFT NGWVQSYGSRCV+PP
Sbjct:  365 WLAFSVQKMRELAILARVLAGDQNVGLALAESECAATARRTSPKIHNANVAVRMRAIDQTMRQRATPFARRSEIQRERFGLPAFPTTTIGSFPQTTAVRNARAAHARGAMSEEQYDRFLKEEIARAVRWQEDIGLDVLVHGEFERNDMVQYFSEQLAGFAFTRNGWVQSYGSRCVRPP 542          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BLOFL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia floridanus GN=metE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDE---------AYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E+  L  AL+   ++          Y+++N      R +S  + N  VQ+    +   DH R T    R+  Q  + NLP  PTTTIGSFPQT ++R++R +FK K+I+ED Y   I++ I  +++ QE+LD+D+LVHGEPERNDMVEYFGE L GF  + +GW+QSYGSRC+KPP
Sbjct:  349 WFAFAIQKCSEIKLLCDALNSNHNDNSDQQNILKKYYNTNI----QRLNSNIINNPQVQERCKNIITLDHSRKTKHITRMKLQHNRFNLPLYPTTTIGSFPQTSEIRKLRLKFKNKQINEDYYYTHIQQYIKKIIQEQEKLDLDILVHGEPERNDMVEYFGENLKGFVSSQHGWIQSYGSRCIKPP 530          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 90/180 (50.00%), Postives = 116/180 (64.44%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKAL---SGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  L + L   +G  DE   +  +AA A R++S  +    V +    +  +D +R      R   Q+K+L LP  PTTTIGSFPQT ++R  RR+ KA +++ + Y   ++EEI   V  QEE+ +DVLVHGE ERNDMVEYFGEQL GFAFT  GWVQSYGSRCVKPP
Sbjct:  347 WLAFARQKLDELVVLGRLLGDRAGAADEQAAAEASAALADRQASTHIHKAEVAERMQRVGPADRQRGQPYPERARKQRKRLALPLFPTTTIGSFPQTAEIRAARRDLKAGRLTPEAYEARMREEIAFAVARQEEIGLDVLVHGEAERNDMVEYFGEQLDGFAFTRAGWVQSYGSRCVKPP 526          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_HAES29.093e-4251.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALCBS9.093e-4250.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALTY1.188e-4151.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALHS1.188e-4151.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOL51.188e-4150.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITWN1.551e-4149.165-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXBR1.551e-4151.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA1.551e-4147.755-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOFL1.551e-4145.705-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH1.551e-4150.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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