CN182036

Overview
NameCN182036
Unique NameCN182036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182036_ssr156 microsatellite CN182036_ssr156:156..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2301 contig Csv1_Contig2301:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEE4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas entomophila (strain L48) GN=metE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.312e-45
Identity = 97/180 (53.89%), Postives = 121/180 (67.22%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEA----YFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LAKA++ Q + A      + + A Q  R +SPR+   AVQ   AA+K +D +RAT    R+  Q+  L+LP  PTTTIGSFPQT  +R  R+ FK  K++E DYV+ +  EI + V++QE L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  349 WLAFAVQKCQEVALLAKAIN-QPEAADVVTVLAQSRAVQHRRATSPRIHKPAVQARVAAIKPADSQRATAFEQRIAKQRAGLDLPAFPTTTIGSFPQTSAIRLARQSFKQGKLTEADYVEAMHSEIRHAVEIQENLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKP 527          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.020e-45
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD---EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LA+A+   +D   +A  + + A QA+R  SPR+   AVQ   AA++  D RR +  + R++ Q+ +L LP  PTTTIGSFPQT  +R  R+ +K  ++S  DY + ++ EI + V +QE++ +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  353 WLAFAVQKCSEVATLARAIDDPQDAEVQAALARSRAVQAARAQSPRIHKPAVQARLAAIEAKDSRRTSVFATRIELQRARLQLPAFPTTTIGSFPQTPAIRLARQAYKQGRLSLGDYTEAMQAEIRHAVAVQEQIGLDVLVHGEAERNDMVEYFAEQLEGYVFTRFGWVQSYGSRCVKP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_PSEPW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas putida (strain W619) GN=metE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.944e-45
Identity = 98/180 (54.44%), Postives = 120/180 (66.67%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSS----NAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKP 530
            WLAFA QK  EV  LAKA++ Q D A  ++    + A QA R SSPR+   AVQ    A+K  D +R +    R+  Q+  LNLP  PTTTIGSFPQT  +R  R+ FK  K++E DYV+ +  EI + V++QE L +DVLVHGE ERNDMVEYF EQL G+ FT  GWVQSYGSRCVKP
Sbjct:  353 WLAFAVQKCQEVAVLAKAVN-QPDAAEVAAALARSRAIQAGRASSPRIHKPAVQARVHAIKPGDSQRQSAFGQRIAKQRAGLNLPAYPTTTIGSFPQTPAIRLARQAFKQGKLTEADYVEAMHSEIRHAVQIQENLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BURP8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.944e-45
Identity = 99/179 (55.31%), Postives = 118/179 (65.92%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  LA AL+  +   EA   +NA A  SR++SPRV N AV+ A A +  S  +RA    AR   Q   L LP  PTTTIGSFPQT D+RR R +FKA ++    Y   ++ EI   VK QE L +DVLVHGE ERNDMVEYFGEQL G+ F+  GWVQSYGSRCVKPP
Sbjct:  351 WLAFALQKLDELTLLASALNNGRACVEAELLANAKAIESRRASPRVHNAAVKAALARIDASLGQRANAYPARAAKQAAALALPAFPTTTIGSFPQTADIRRARSQFKAGELDYAGYKLAMEREITRAVKEQETLGLDVLVHGEAERNDMVEYFGEQLDGYVFSQFGWVQSYGSRCVKPP 529          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.151e-45
Identity = 90/179 (50.28%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAF+AQK+ E+  L + L+  ++  EA  +++  A+ SR  S R+ N  V +    L   D +R    + R   QQ++ NLP LPTTTIGSFPQT  +R+ R  F+  ++S  +Y+  ++ EI  +++ QEE+ +DVLVHGEPERNDMVEYFGEQL G+AFT NGWVQSYGSRCVKPP
Sbjct:  344 WLAFSAQKLEEMTTLGRGLNQGRESVEAILTASDEARRSRTESSRIHNPIVHQRVDNLTERDSQRNHPFATRKHLQQQRFNLPLLPTTTIGSFPQTATIRQARAAFRKNELSHLEYLSAMRAEIREMIRKQEEIGLDVLVHGEPERNDMVEYFGEQLWGYAFTENGWVQSYGSRCVKPP 522          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BORPD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.151e-45
Identity = 95/181 (52.49%), Postives = 127/181 (70.17%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQK----DEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WL+FAAQK+ E+  L +AL+  +    DEA  +  AA +A R+S+ R+ N AV +  A        RA   + R+  QQ+ L LP  PTTTIGSFPQT ++R +RR++K+  +S+  Y   I++EI +V++ QE++ +DVLVHGEPERNDMVEYFGE L+GFAFT NGWVQSYGSRCVKPP
Sbjct:  353 WLSFAAQKLDELGLLGRALADARAPGVDEALAAQRAALRARRQSA-RIHNPAVGRRMAESNAVTRERAP-FAERIARQQQLLKLPAFPTTTIGSFPQTAEIRALRRDWKSGALSDSAYEAAIRKEIESVIRFQEKIGLDVLVHGEPERNDMVEYFGELLAGFAFTRNGWVQSYGSRCVKPP 531          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_ERWCT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Erwinia carotovora subsp. atroseptica GN=metE PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.728e-45
Identity = 93/177 (52.54%), Postives = 119/177 (67.23%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W AFA QK  E++ L++AL+    +A  + +A  +A R++S RV N AV +  AA+   D +R    S R DAQ+++ NLP  PTTTIGSFPQT ++R +R +FK  ++  ++Y   I E I   V  QE L +DVLVHGE ERNDMVEYFGE L GF FT NGWVQSYGSRCVKPP
Sbjct:  345 WFAFAIQKCAELSLLSQALNSGNGQALEAYSAPIRA-RRTSTRVNNVAVAQRLAAITAQDSQRQNVYSVRADAQRERFNLPAWPTTTIGSFPQTTEIRGLRLDFKQGRLDGNNYRTGIAEHIKQAVAEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGWVQSYGSRCVKPP 520          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_BUCAI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metE PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.728e-45
Identity = 93/177 (52.54%), Postives = 115/177 (64.97%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            W +FA QK  E+  L+ AL+   D       +     R  S RV    V+   + +    H+R +    R   Q KK N P LPTTTIGSFPQT+ +R++RR+FK   ++E++Y K IK+ I  V+K+QEELDIDVLVHGE ERNDMVEYFGE L GFAFT NGWVQSYGSRCVKPP
Sbjct:  343 WFSFAVQKCEELRLLSSALN-DNDIDSIKEWSLPIYERSVSKRVNKIEVENRLSNVLIDKHQRLSPYKTRSIEQNKKFNFPILPTTTIGSFPQTISIRKLRRDFKLGLVTEEEYTKIIKKNIKKVIKIQEELDIDVLVHGEAERNDMVEYFGEHLDGFAFTDNGWVQSYGSRCVKPP 518          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_RALEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.148e-44
Identity = 96/180 (53.33%), Postives = 125/180 (69.44%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKDEAY---FSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA +K+ E++ L +AL+ Q D       +++ AAQASR++S RV N  VQ+  AA+      RA+  + R++ Q++ L LP LPTTTIGSFPQT  +R+ R  FK  +I   +Y++ I+ EI   V+ QE L +DVLVHGE ERNDMVEYFGEQL G+ FT NGWVQSYGSRCVKPP
Sbjct:  343 WLAFATEKLDELSVLGRALN-QGDAVVAEALAASDAAQASRRASRRVVNPRVQQRLAAVSAGMADRASPFAERIERQRQALQLPLLPTTTIGSFPQTAAIRQTRAAFKRGEIGALEYLERIRAEIAVAVRKQEALGLDVLVHGEAERNDMVEYFGEQLCGYGFTENGWVQSYGSRCVKPP 521          
BLAST of CN182036 vs. ExPASy Swiss-Prot
Match: METE_THIDA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metE PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.499e-44
Identity = 94/179 (52.51%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    3 WLAFAAQKVVEVNALAKALSGQKD--EAYFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPNLPTTTIGSFPQTMDLRRVRREFKAKKISEDDYVKTIKEEINNVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPP 533
            WLAFA QK+ E+  L  AL+  +D   A  ++N AA  +R++SPRV + AV+ A AA+      R +  + R   Q   L LP  PTTTIGSFPQT ++R+ RR FKA +I +  Y   +++EI + V+ QE L +DVLVHGE ERNDMVEYFGEQL G+AF+  GWVQSYGSRCVKPP
Sbjct:  353 WLAFAKQKLDELRVLVAALNHGRDTVSAELAANRAACDARRNSPRVNDPAVKAAVAAITPQSGARQSPYAVRAAKQAAHLRLPRFPTTTIGSFPQTAEIRQARRRFKAGEIDDAAYRAAMQDEIAHSVRAQEALGLDVLVHGEAERNDMVEYFGEQLDGYAFSRFGWVQSYGSRCVKPP 531          
The following BLAST results are available for this feature:
BLAST of CN182036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
METE_PSEE42.312e-4553.895-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU53.020e-4550.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEPW3.944e-4554.445-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP83.944e-4555.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU5.151e-4550.285-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPD5.151e-4552.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ERWCT6.728e-4552.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAI6.728e-4552.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALEH1.148e-4453.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THIDA1.499e-4452.515-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182036 ID=CN182036; Name=CN182036; organism=Citrus sinensis; type=EST; length=534bp
GCTGGCTTGCATTTGCTGCACAGAAAGTAGTTGAAGTAAATGCATTGGCC
AAGGCATTGTCTGGGCAAAAGGATGAGGCATACTTCTCTTCTAATGCTGC
AGCTCAGGCTTCAAGAAAATCCTCCCCAAGGGTGACAAATGAGGCTGTCC
AAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCATCGCCGAGCCACAAAT
GTCAGTGCTAGGTTGGATGCTCAGCAGAAGAAGTTGAACTTGCCAAATCT
TCCTACCACCACCATTGGATCTTTCCCACAAACGATGGATCTCAGAAGAG
TCCGTCGTGAATTCAAGGCCAAGAAAATCTCTGAGGATGACTATGTCAAG
ACTATCAAGGAGGAAATCAACAACGTTGTCAAGCTCCAGGAAGAGCTTGA
CATTGATGTTTTGGTGCATGGAGAACCAGAGAGGAATGATATGGTTGAGT
ACTTCGGTGAGCAATTATCTGGTTTTGCCTTCACTGTGAATGGGTGGGTT
CAATCTTATGGCTCCCGCTGTGTCAAGCCTCCTA
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